PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2024-07-16
ENA first public
ERC000047
ENA-CHECKLIST
University of California
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS20584328
SRA accession
eee80256-e6b6-490a-b589-145516c0bfc0
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
MITSUKO TSUKIJISHIN
collected_by
JAMSTEC
collecting institution
2021-04-27
collection date
97.41
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
1.08
%
contamination score
adult ctenophore tissue
environmental medium
Pacific Ocean
geographic location (country and/or sea)
28.46
DD
geographic location (latitude)
129.65
DD
geographic location (longitude)
JAPAN | KAGOSHIMA | 894-0507 | AMAMI-SHI | KASARI-CHO | 3622 KISE | SAKIHARA BEACH
geographic location (region and locality)
WATER COLUMN
habitat
adult
host life stage
Bolinopsis sp. AMAMI
host scientific name
not provided
host sex
3027315
host taxid
Dhugal Lindsay
identified_by
JAMSTEC
identifier_affiliation
metagenome-assembled genome
investigation type
Ctenophore: Bolinopsis sp. AMAMI
isolation_source
marine biome
local environmental context
ctenophore metagenome
metagenomic source
38
number of standard tRNAs extracted
Cellvibrionaceae bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SCUBA plastic bag
sample collection method
SAMEA115837771
sample derived from
Cellvibrionaceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
UCALI0000202
specimen_id
NOT_PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
eee80256-e6b6-490a-b589-145516c0bfc0-asg-bin.4
title
jtBolSpea2.Cellvibrionaceae_1
tolid