2024-07-22
ENA first public
ERC000011
ENA-CHECKLIST
Ifremer
INSDC center name
public
INSDC status
Not applicable
RESTRICTION_ENZYME
ERS18498201
SRA accession
sam_S6
Submitter Id
18 months
age
AOAR (Aquaculture Origin Aquaculture Raised)
aquaculture origin
SeBiMER
broker name
Hemocyte
cell_type
University of Montpellier
collecting institution
2019-11-17
collection date
Emmanuel Vignal
collector name
Pacific oyster
common name
Adult
dev_stage
none
environmental package
No
environmental_sample
France
geographic location (country and/or sea)
0
m
geographic location (depth)
0
m
geographic location (elevation)
45.79823096728334
DD
geographic location (latitude)
-1.1506379972355019
DD
geographic location (longitude)
France, Nouvelle-Aquitaine, La Tremblade
geographic location (region and locality)
eukaryote
investigation type
Ifremer breeding seawater 34PSU - Lat/Lon : 45.79823096728334,-1.1506379972355019
isolation_source
not providded
multiplex identifiers
Crassostrea gigas
organism
F:5-CTACACGACGCTCTTCCGATCT-3' R:5-AAGCAGTGGTATCAACGCAGAG-3
pcr primers
diploid
ploidy
hemofight
project name
Crassostrea gigas hemocytes from a 18 months old Ifremer Standardised Animal originated from "Station Ifremer La Tremblade (France) ". Hemocytes where isolated from hemolymph poncture in Alsever modified medium then processed with the 10X chromium Drop-Seq scRNA.
sample_description
S6
sample_name
Crassostrea gigas
scientific_name
Sequencing by synthesis (Illumina)
sequencing method
Hemolymph
tissue_type
Drop ScRNA sequences (10X chromium technique) from one Crassostrea gigas animal - 3000 hemocytes
title