ERC000047
ENA-CHECKLIST
2024-05-23T00:29:07Z
ENA-FIRST-PUBLIC
2024-05-23T00:29:07Z
ENA-LAST-UPDATE
SAMEA110024535
External Id
BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name
2024-05-23T00:29:07Z
INSDC first public
2024-05-23T00:29:07Z
INSDC last update
public
INSDC status
ERS12043409
SRA accession
HRS-ES9-bin-29
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
MEGAHIT; kmer set 49,69,89,109,129,149
assembly software
coverage and kmer
binning parameters
MetaBAT2
binning software
2018-04-23
collection date
59.71
%
completeness score
checkm
completeness software
1.36
%
contamination score
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales
description
freshwater lake
environment (biome)
lake
environment (feature)
fresh water
environment (material)
Czech Republic
geographic location (country and/or sea)
48.846361
DD
geographic location (latitude)
14.487639
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
Freshwater lake
isolation_source
freshwater metagenome
metagenomic source
Bordetella parapertussis
organism
PRJEB52406
project name
ERS11712861
sample derived from
Bordetella parapertussis
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
ERS11712861
title