ERC000024
ENA-CHECKLIST
2024-06-22T01:06:25Z
ENA-FIRST-PUBLIC
2024-06-22T01:06:25Z
ENA-LAST-UPDATE
SAMEA110176287
External Id
Microbial ecology
INSDC center name
2024-06-22T01:06:25Z
INSDC first public
2024-06-22T01:06:25Z
INSDC last update
public
INSDC status
ERS12275099
SRA accession
2NDNOCUP6HS
Submitter Id
2011-06-20
collection date
Sample of hyporheic sediment, taken from a riffle located upstream a combined-sewer overflow outlet spilling out in the channel of an intermittent stream
description
watercourse (ENVO:00000029)
environment (biome)
stream bed (ENVO_00000383)
environment (feature)
sediment
environment (material)
France
geographic location (country and/or sea)
0.30
m
geographic location (depth)
314
m
geographic location (elevation)
45.743931
DD
geographic location (latitude)
4.689935
DD
geographic location (longitude)
Auvergne-Rh�ne-Alpes administrative region, Rh�ne department, Gr�zieu-la-Varenne town
geographic location (region and locality)
mimarks-survey
investigation type
freshwater sediment metagenome
organism
ILMN-PTCF2 (GTGCCGYTRTGYGGCAAGA) and ILMN-PTCF2m (GTGCCCYTRTGYGGCAAGT); ILMN-PTCR2 (ATCAKYGCGGCGCGGTCRTA) and ILMNPTCR2m (ATGAGBGCTGCCCTGTCRTA)
pcr primers
Ecological assessment of combined-sewer overflow practices (PRJEB53724) - Domic 2178
project name
after the combined-sewer overflow device was made compliant (less than 20 spill days per year)
sampling campaign
UP6
sampling transect ID
freshwater sediment metagenome
scientific_name
Sequencing by synthesis (Illumina MiSeq Illumina V3)
sequencing method
Thiopurine S-methyltransferase (tpm)
target gene
200-235 bp, including the VPLCGK and YDRAAM conserved domains
target subfragment
hyporheic sediment
title
water
water environmental package