PROKKA (version 1.14.5)
16S recovery software
Yes
16s recovered
ERC000050
ENA-CHECKLIST
2024-03-29T10:53:08Z
ENA-FIRST-PUBLIC
2024-03-29T10:53:08Z
ENA-LAST-UPDATE
SAMEA115457858
External Id
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
2024-03-29T10:53:08Z
INSDC first public
2024-03-29T10:53:08Z
INSDC last update
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS18629750
SRA accession
7a80cd7a-f08e-4afa-a530-34b7d63ed64a
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG
assembly software
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
binning software
aquatic biome
broad-scale environmental context
NICOLE WEBSTER
collected_by
AIMS
collecting institution
2020-09-23
collection date
43.14
%
completeness score
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
completeness software
1.68
%
contamination score
12.0
m
depth
adult sponge tissue
environmental medium
Australia
geographic location (country and/or sea)
18.91
DD
geographic location (latitude)
147.70
DD
geographic location (longitude)
Queensland | Great Barrier Reef | Davies Reef
geographic location (region and locality)
Reef
habitat
adult
host life stage
Carteriospongia foliascens
host scientific name
not collected
host sex
593584
host taxid
NICOLE WEBSTER
identified_by
AIMS
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Carteriospongia foliascens
isolation_source
marine reef biome
local environmental context
sponge metagenome
metagenomic source
21
number of standard tRNAs extracted
uncultured candidatus Porisulfidus sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA115457815
sample derived from
uncultured candidatus Porisulfidus sp.
scientific_name
Pacbio Sequel II
sequencing method
GHC0000113
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.5)
tRNA extraction software
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
7a80cd7a-f08e-4afa-a530-34b7d63ed64a-asg-MAGScoT_cleanbin_000045
title
odCarFoli1.Porisulfidus_sp_4
tolid