SAMN00000002
External Id
Washington University, Genome Sequencing Center
INSDC center name
2008-04-04T00:00:00Z
INSDC first public
2022-09-25T02:00:02.729Z
INSDC last update
SRS000002
INSDC secondary accession
live
INSDC status
MIGS.ba
NCBI submission model
MIGS.ba.6.0
NCBI submission package
SRS000002
SRA accession
PCAP
assembly
terrestrial biome [ENVO:00000446]
biome
not determined
collection date
Alistipes putredinis (GenBank Accession Number for 16S rDNA gene: L16497) is a member of the Bacteroidetes division of the domain bacteria and has been isolated from human feces. It has been found in 16S rDNA sequence-based enumerations of the colonic microbiota of adult humans (Eckburg et. al. (2005), Ley et. al. (2006)).
description
2550000
estimated size
human-associated habitat [ENVO:00009003]
feature
Level 3: Improved-High-Quality Draft11.6x;20
finishing strategy (depth of coverage)
not determined
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
9606
host taxid
not determined
isol_growth_condt
not determined
lat lon
biological product [ENVO:02000043]
material
not determined
misc_param: HMP body site
gastrointestinal_tract
misc_param: HMP supersite
not determined
nucleic acid extraction
not determined
num_replicons
Alistipes putredinis DSM 17216
http://purl.obolibrary.org/obo/NCBITaxon_445970
organism
Alistipes putredinis DSM 17216
project name
Reference Genome
project_type
not determined
ref_biomaterial
454-GS20, Sanger
sequencing method
http://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf
sop
DSM 17216, CCUG 45780, CIP 104286, ATCC 29800, Carlier 10203, VPI 3293
source_mat_id
DSM 17216
strain
Alistipes putredinis DSM 17216
title
type strain of Bacteroides putredinis
type-material