PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2024-07-31
ENA first public
ERC000050
ENA-CHECKLIST
University of Derby
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS20820245
SRA accession
edd944d2-cd21-40b5-901b-901ee3428075
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
UNIVERSITY OF DERBY
barcoding center
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
RICHARD KARP
collected_by
UNIVERSITY OF MIAMI
collecting institution
2021-03-29
collection date
67.2
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
2.0
%
contamination score
9
m
depth
adult coral tissue
environmental medium
USA
geographic location (country and/or sea)
25.68
DD
geographic location (latitude)
-80.10
DD
geographic location (longitude)
FLORIDA | MIAMI | KB NURSERY
geographic location (region and locality)
In situ coral nursery
habitat
adult
host life stage
Acropora cervicornis
host scientific name
hermaphrodite
host sex
6130
host taxid
RICHARD KARP
identified_by
UNIVERSITY OF MIAMI
identifier_affiliation
metagenome-assembled genome
investigation type
Coral: Acropora cervicornis
isolation_source
marine benthic biome
local environmental context
coral metagenome
metagenomic source
28
number of standard tRNAs extracted
Spirochaetaceae bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
Snip coral branch
sample collection method
SAMEA115885809
sample derived from
Spirochaetaceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
UDUK0000163
specimen_id
NOT_PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
edd944d2-cd21-40b5-901b-901ee3428075-asg-MAGScoT_cleanbin_000002
title
jaAcrCerv1.Spirochaetaceae_1
tolid