PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2024-07-31
ENA first public
ERC000050
ENA-CHECKLIST
Nova Southeastern University
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS20820189
SRA accession
5c125fa6-cd7a-45a1-875c-bcd246f2f13c
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
NOVA SOUTHEASTERN UNIVERSITY
barcoding center
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7); MetaTOR
binning software
aquatic biome
broad-scale environmental context
JOAQUIM GOES
collected_by
COLUMBIA UNIVERSITY
collecting institution
2015-01-13
collection date
87.5
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
1.24
%
contamination score
0.0
m
depth
dinoflagellate culture
environmental medium
Oman
geographic location (country and/or sea)
23.53
DD
geographic location (latitude)
58.75
DD
geographic location (longitude)
Bandar Al Khairan
geographic location (region and locality)
Coastal ocean
habitat
not provided
host life stage
Noctiluca scintillans
host scientific name
not applicable
host sex
2966
host taxid
JOAQUIM GOES | SENJIE LIN
identified_by
COLUMBIA UNIVERSITY | UNIVERSITY OF CONNECTICUT
identifier_affiliation
metagenome-assembled genome
investigation type
Dinoflagellate: Noctiluca scintillans
isolation_source
marine biome
local environmental context
dinoflagellate metagenome
metagenomic source
31
number of standard tRNAs extracted
Saprospiraceae bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
Endosymbiont
relationship
SAMEA115885753
sample derived from
Saprospiraceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
NSU0024101
specimen_id
NOT APPLICABLE
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
5c125fa6-cd7a-45a1-875c-bcd246f2f13c-asg-MAGScoT_cleanbin_000049
title
pyNocScin1.Saprospiraceae_1
tolid