PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2024-07-31
ENA first public
ERC000047
ENA-CHECKLIST
University of Derby
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS20820246
SRA accession
57ed26a3-ce50-42e0-8894-c3f89ee8a825
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
UNIVERSITY OF DERBY
barcoding center
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
RICHARD KARP
collected_by
UNIVERSITY OF MIAMI
collecting institution
2021-03-29
collection date
98.9
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
1.1
%
contamination score
9
m
depth
adult coral tissue
environmental medium
USA
geographic location (country and/or sea)
25.68
DD
geographic location (latitude)
-80.10
DD
geographic location (longitude)
FLORIDA | MIAMI | KB NURSERY
geographic location (region and locality)
In situ coral nursery
habitat
adult
host life stage
Acropora cervicornis
host scientific name
hermaphrodite
host sex
6130
host taxid
RICHARD KARP
identified_by
UNIVERSITY OF MIAMI
identifier_affiliation
metagenome-assembled genome
investigation type
Coral: Acropora cervicornis
isolation_source
marine benthic biome
local environmental context
coral metagenome
metagenomic source
31
number of standard tRNAs extracted
Candidatus Aquarickettsia rohweri
organism
WHOLE ORGANISM
organism part
ASG
project name
Snip coral branch
sample collection method
SAMEA115885809
sample derived from
Candidatus Aquarickettsia rohweri
scientific_name
Pacbio Sequel II
sequencing method
UDUK0000163
specimen_id
NOT_PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
57ed26a3-ce50-42e0-8894-c3f89ee8a825-asg-MAGScoT_cleanbin_000001
title
jaAcrCerv1.Aquarickettsia_rohweri_1
tolid