PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2024-07-31
ENA first public
ERC000050
ENA-CHECKLIST
University of Vienna (Cephalopod)
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS20820046
SRA accession
55ac6283-cb40-4537-bbda-a62f69d460ea
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
GUSTAVO SANCHEZ
collected_by
Hiroshima University
collecting institution
2021-04-26
collection date
73.8
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
6.27
%
contamination score
adult cephalopod tissue
environmental medium
Japan
geographic location (country and/or sea)
not collected
DD
geographic location (latitude)
not collected
DD
geographic location (longitude)
Kaminokai | Tosa Bay | Kochi Prefecture
geographic location (region and locality)
Neritic, near shore
habitat
adult
host life stage
Sepioteuthis lessoniana
host scientific name
female
host sex
34570
host taxid
GUSTAVO SANCHEZ
identified_by
Hiroshima University
identifier_affiliation
metagenome-assembled genome
investigation type
Cephalopod: Sepioteuthis lessoniana
isolation_source
marine biome
local environmental context
mollusc metagenome
metagenomic source
41
number of standard tRNAs extracted
Paracoccaceae bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA115885592
sample derived from
Paracoccaceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
VIEC0000008
specimen_id
NOT COLLECTED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
55ac6283-cb40-4537-bbda-a62f69d460ea-asg-MAGScoT_cleanbin_000069
title
xcSepLess1.Paracoccaceae_2
tolid