PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2024-07-31
ENA first public
ERC000050
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS20820100
SRA accession
2b3a6eee-a063-4a2d-838c-ae49c76b58a1
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
JADRANKA NAPPI
collected_by
University of New South Wales, Sydney, Australia
collecting institution
2020-08-27
collection date
75.71
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
5.28
%
contamination score
8.0
m
depth
adult sponge tissue
environmental medium
Australia
geographic location (country and/or sea)
-33.99
DD
geographic location (latitude)
151.23
DD
geographic location (longitude)
Sydney | Bare Island
geographic location (region and locality)
Rocky reef
habitat
adult
host life stage
Cymbastela concentrica
host scientific name
hermaphrodite
host sex
484451
host taxid
JADRANKA NAPPI
identified_by
University of New South Wales, Sydney, Australia
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Cymbastela concentrica
isolation_source
marine reef biome
local environmental context
sponge metagenome
metagenomic source
30
number of standard tRNAs extracted
Flavobacteriaceae bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA115885654
sample derived from
Flavobacteriaceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000111
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
2b3a6eee-a063-4a2d-838c-ae49c76b58a1-asg-MAGScoT_cleanbin_000094
title
odCymConc1.Flavobacteriaceae_4
tolid