PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2024-07-31
ENA first public
ERC000047
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS20820155
SRA accession
dea61dae-8d83-4a52-8d99-894d0c87a452
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
JADRANKA NAPPI
collected_by
University of New South Wales, Sydney, Australia
collecting institution
2020-08-27
collection date
90.33
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
3.79
%
contamination score
8.0
m
depth
adult sponge tissue
environmental medium
Australia
geographic location (country and/or sea)
-33.99
DD
geographic location (latitude)
151.23
DD
geographic location (longitude)
Sydney | Bare Island
geographic location (region and locality)
Rocky reef
habitat
adult
host life stage
Cymbastela concentrica
host scientific name
hermaphrodite
host sex
484451
host taxid
JADRANKA NAPPI
identified_by
University of New South Wales, Sydney, Australia
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Cymbastela concentrica
isolation_source
marine reef biome
local environmental context
sponge metagenome
metagenomic source
39
number of standard tRNAs extracted
Bdellovibrionales bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA115885654
sample derived from
Bdellovibrionales bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000111
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
dea61dae-8d83-4a52-8d99-894d0c87a452-asg-MAGScoT_cleanbin_000039
title
odCymConc1.Bdellovibrionales_6
tolid