PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2024-08-05
ENA first public
ERC000047
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS20848984
SRA accession
0ef71ae0-4384-4122-aa05-a38a78c2d7b0
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
THIERRY PEREZ
collected_by
CNRS
collecting institution
2021-03-23
collection date
commercial sponge
common name
97.8
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
3.3
%
contamination score
10-15
m
depth
adult sponge tissue
environmental medium
France
geographic location (country and/or sea)
43.16
DD
geographic location (latitude)
5.60
DD
geographic location (longitude)
La Ciotat
geographic location (region and locality)
semi-dark cave
habitat
adult
host life stage
Spongia officinalis
host scientific name
not applicable
host sex
252964
host taxid
THIERRY PEREZ
identified_by
CNRS
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Spongia officinalis
isolation_source
marine benthic biome
local environmental context
sponge metagenome
metagenomic source
51
number of standard tRNAs extracted
Longimicrobiales bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
Heterotrophic Microbiome (Mostly)
relationship
SAMEA115905044
sample derived from
Longimicrobiales bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000180
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
0ef71ae0-4384-4122-aa05-a38a78c2d7b0-asg-MAGScoT_cleanbin_000033
title
odSpoOffi1.Longimicrobiales_3
tolid