PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2024-08-06
ENA first public
ERC000047
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS20849334
SRA accession
ec3df650-c2c4-4f62-895a-0943957901a1
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
KATHRIN BUSCH
collected_by
GEOMAR
collecting institution
2018-08-09
collection date
98.02
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
2.97
%
contamination score
333
m
depth
adult sponge tissue
environmental medium
Norway
geographic location (country and/or sea)
71.59
DD
geographic location (latitude)
21.37
DD
geographic location (longitude)
Troms√∏flaket_C
geographic location (region and locality)
continental shelf:plain
habitat
adult
host life stage
Stryphnus fortis
host scientific name
not applicable
host sex
1006811
host taxid
HANS TORE RAPP
identified_by
UiB, Norway
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Stryphnus fortis
isolation_source
marine benthic biome
local environmental context
sponge metagenome
metagenomic source
50
number of standard tRNAs extracted
Dehalococcoidia bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
unknown
relationship
SAMEA115905275
sample derived from
Dehalococcoidia bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000039
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
ec3df650-c2c4-4f62-895a-0943957901a1-asg-MAGScoT_cleanbin_000117
title
odStrFort4.Dehalococcoidia_32
tolid