PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2024-08-07
ENA first public
ERC000050
ENA-CHECKLIST
University of Derby
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS20853780
SRA accession
93a06219-b67e-491b-b6e2-1c5de9fbb226
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
PEDRO FRADE
collected_by
Natural History Museum Vienna
collecting institution
2022-09-20
collection date
98.71
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
5.43
%
contamination score
10.8
m
depth
adult coral tissue
environmental medium
Curacao
geographic location (country and/or sea)
12.14
DD
geographic location (latitude)
-69.00
DD
geographic location (longitude)
Boca Sami | Snake Bay
geographic location (region and locality)
coral bed surrounded by sand and living coral reef
habitat
adult
host life stage
Madracis auretenra
host scientific name
not collected
host sex
999287
host taxid
PEDRO FRADE
identified_by
Natural History Museum Vienna
identifier_affiliation
metagenome-assembled genome
investigation type
Coral: Madracis auretenra
isolation_source
marine benthic biome
local environmental context
coral metagenome
metagenomic source
85
number of standard tRNAs extracted
Endozoicomonas sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
fragmented using bone cutters while SCUBA diving
sample collection method
SAMEA115909930
sample derived from
Endozoicomonas sp.
scientific_name
Pacbio Sequel II
sequencing method
UDUK0000417
specimen_id
NOT_PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
93a06219-b67e-491b-b6e2-1c5de9fbb226-asg-bin.53
title
jaMadAure2.Endozoicomonas_sp_1
tolid