PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2024-08-12
ENA first public
ERC000047
ENA-CHECKLIST
Queen Mary University of London
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS20878165
SRA accession
484d33e6-743c-4544-9e23-d9dd82aab886
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Michael J Boyle
collected_by
former Smithsonian Institute
collecting institution
2021-07-01
collection date
94.83
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
2.87
%
contamination score
0.5
m
depth
0
m
elevation
adult annelid tissue
environmental medium
USA
geographic location (country and/or sea)
27.46
DD
geographic location (latitude)
-80.31
DD
geographic location (longitude)
FLORIDA | FORT PIERCE | INDIAN LAGOON | MANGROOVE
geographic location (region and locality)
between rock and dead oyster bed crevices
habitat
adult
host life stage
Themiste lageniformis
host scientific name
female
host sex
216211
host taxid
Michael J Boyle
identified_by
Former Smithsonian Institute
identifier_affiliation
metagenome-assembled genome
investigation type
Annelid: Themiste lageniformis
isolation_source
marine biome
local environmental context
annelid metagenome
metagenomic source
184
number of standard tRNAs extracted
Pirellulaceae bacterium
organism
WHOLE ORGANISM
organism part
USA | FLORIDA | FORT PIERCE | INDIAN LAGOON | MANGROOVE
original collection location
27.471679
DD
original geographic location (latitude)
-80.306737
DD
original geographic location (longitude)
ASG
project name
Manually
sample collection method
SAMEA115925830
sample derived from
Pirellulaceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
QMOUL0000300
specimen_id
NOT_PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
484d33e6-743c-4544-9e23-d9dd82aab886-asg-MAGScoT_cleanbin_000246
title
wgTheLage1.Pirellulaceae_2
tolid