PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2024-08-12
ENA first public
ERC000050
ENA-CHECKLIST
Queen Mary University of London
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS20877868
SRA accession
2eb21f95-0c19-4245-baf7-51ca4e55c210
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Michael J Boyle
collected_by
former Smithsonian Institute
collecting institution
2021-07-01
collection date
93.2
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
6.8
%
contamination score
0.5
m
depth
0
m
elevation
adult annelid tissue
environmental medium
USA
geographic location (country and/or sea)
27.46
DD
geographic location (latitude)
-80.31
DD
geographic location (longitude)
FLORIDA | FORT PIERCE | INDIAN LAGOON | MANGROOVE
geographic location (region and locality)
between rock and dead oyster bed crevices
habitat
adult
host life stage
Themiste lageniformis
host scientific name
female
host sex
216211
host taxid
Michael J Boyle
identified_by
Former Smithsonian Institute
identifier_affiliation
metagenome-assembled genome
investigation type
Annelid: Themiste lageniformis
isolation_source
marine biome
local environmental context
annelid metagenome
metagenomic source
33
number of standard tRNAs extracted
Nitrosopumilus sp.
organism
WHOLE ORGANISM
organism part
USA | FLORIDA | FORT PIERCE | INDIAN LAGOON | MANGROOVE
original collection location
27.471679
DD
original geographic location (latitude)
-80.306737
DD
original geographic location (longitude)
ASG
project name
Manually
sample collection method
SAMEA115925830
sample derived from
Nitrosopumilus sp.
scientific_name
Pacbio Sequel II
sequencing method
QMOUL0000300
specimen_id
NOT_PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
2eb21f95-0c19-4245-baf7-51ca4e55c210-asg-MAGScoT_cleanbin_000314
title
wgTheLage1.Nitrosopumilus_sp_9
tolid