SAMN01166292
External Id
Oak Ridge National Laboratory
INSDC center name
2013-02-28T17:02:27Z
INSDC first public
2014-05-06T18:18:32Z
INSDC last update
killed
INSDC status
SRS362518
SRA accession
PRJNA170938_GSR5A4N03
Submitter Id
NCBI
broker name
The sediments were obtained from station Z02 located at the 20 m isobath south of Terrebonne Bay in the northern Gulf of Mexico (latitude 28.875*N; longitude 90.428*W). The cores were collected in April and September 2006. The total community genomic DNA was extracted using PowerSoil DNA Isolation Kit and V4 region of the archaeal 16S rRNA gene was amplified and sequenced on a 454 Life Sciences Genome Sequencer FLX using Titanium chemistry. The goal of the study was to characterize archaeal communities in muddy surficial sediments at normoxic and hypoxic conditions in the overlying water. This sample is a pool of *sample name *organism sample title strain breed cultivar isolate label description *biome *collection_date *feature *geo_loc_name *lat_lon *material *project_name "*depth below surface, cm" *elev pH "DIC, mM" "NH4, uM" "Fe 2+, uM" "Fe 3+, uM" "Mn, uM" "NO2, uM" "Nox, uM" "PO4, uM" "Fe(II), umol/g" "Fe(III), umol / g" "Organic C, umol / g" "Organic N, umol/ g" "Acid Volatile Sulfide, umol/g (dry weight)" "Chromium Reducible Sulfur, umol/g (dry weight)" "Sulfate Reduction Rate, nmol/ml/day" H3019 uncultured Archaea normoxic marine sediment 3.6 mg /L of oxygen in the overlying water marine April 7 2006 "Cruise GM0604, Station Z02b" Gulf of Mexico latitude 28.875*N; longitude 90.428*W sediment Northern Gulf of Mexico Hypoxia can Alter Sediment Communities of Nitrifying Archaea 1 below see level 7.3 2.80 66.20 57.5 19.81 244.3 0.05 1.72 0.22 21.06 129.43 11.91 1.19 0.02 72.64 nd H3020 uncultured Archaea normoxic marine sediment 3.6 mg /L of oxygen in the overlying water marine April 7 2006 "Cruise GM0604, Station Z02b" Gulf of Mexico latitude 28.875*N; longitude 90.428*W sediment Northern Gulf of Mexico Hypoxia can Alter Sediment Communities of Nitrifying Archaea 3 below see level 6.79 3.40 126.20 213.39 70.1 132.1 0.04 0.92 1.97 33.35 120.31 12.45 1.16 0.03 62.5 nd H3021 uncultured Archaea normoxic marine sediment 3.6 mg /L of oxygen in the overlying water marine April 7 2006 "Cruise GM0604, Station Z02b" Gulf of Mexico latitude 28.875*N; longitude 90.428*W sediment Northern Gulf of Mexico Hypoxia can Alter Sediment Communities of Nitrifying Archaea 5 below see level 7.1 3.20 152.20 108.77 59.67 97.8 0.13 -0.39 1.49 55.88 101.02 19.83 1.24 0.02 78.58 nd H3023 uncultured Archaea normoxic marine sediment 3.6 mg /L of oxygen in the overlying water marine April 7 2006 "Cruise GM0604, Station Z02b" Gulf of Mexico latitude 28.875*N; longitude 90.428*W sediment Northern Gulf of Mexico Hypoxia can Alter Sediment Communities of Nitrifying Archaea 7 below see level 7.28 3.80 199.20 28.81 24.31 96.7 0.09 0.98 0.29 58.45 107.36 19.08 1.26 0.02 74.9 nd H3024 uncultured Archaea normoxic marine sediment 3.6 mg /L of oxygen in the overlying water marine April 7 2006 "Cruise GM0604, Station Z02b" Gulf of Mexico latitude 28.875*N; longitude 90.428*W sediment Northern Gulf of Mexico Hypoxia can Alter Sediment Communities of Nitrifying Archaea 11 below see level 7.56 4.20 241.20 nd nd 88.2 0.14 1.24 nd 11.83 145.79 18.90 1.25 0.04 77.12 nd H3029 uncultured Archaea normoxic marine sediment 3.6 mg /L of oxygen in the overlying water marine April 7 2006 "Cruise GM0604, Station Z02b" Gulf of Mexico latitude 28.875*N; longitude 90.428*W sediment Northern Gulf of Mexico Hypoxia can Alter Sediment Communities of Nitrifying Archaea 3 below see level 6.89 3.20 165.20 209.62 32.71 200.4 0.13 0.18 0.54 33.83 123.27 13.54 1.37 0.23 58.17 nd H3030 uncultured Archaea normoxic marine sediment 3.6 mg /L of oxygen in the overlying water marine April 7 2006 "Cruise GM0604, Station Z02b" Gulf of Mexico latitude 28.875*N; longitude 90.428*W sediment Northern Gulf of Mexico Hypoxia can Alter Sediment Communities of Nitrifying Archaea 5 below see level 7.18 3.20 170.20 39.29 10.03 120.1 0.27 0.95 0.16 54.41 93.14 13.78 1.12 nd nd nd H3031 uncultured Archaea normoxic marine sediment 3.6 mg /L of oxygen in the overlying water marine April 7 2006 "Cruise GM0604, Station Z02b" Gulf of Mexico latitude 28.875*N; longitude 90.428*W sediment Northern Gulf of Mexico Hypoxia can Alter Sediment Communities of Nitrifying Archaea 7 below see level 7.25 3.20 188.20 52.7 13.81 97.1 0.17 -0.31 1.24 56.24 84.20 15.88 1.07 nd nd nd H3033 uncultured Archaea normoxic marine sediment 3.6 mg /L of oxygen in the overlying water marine April 7 2006 "Cruise GM0604, Station Z02b" Gulf of Mexico latitude 28.875*N; longitude 90.428*W sediment Northern Gulf of Mexico Hypoxia can Alter Sediment Communities of Nitrifying Archaea 11 below see level 7.48 3.60 230.20 nd nd 51.7 0.29 2.15 0.51 52.87 67.64 21.08 1.33 nd nd nd H3020D uncultured Archaea normoxic marine sediment 3.6 mg /L of oxygen in the overlying water marine April 7 2006 "Cruise GM0604, Station Z02b" Gulf of Mexico latitude 28.875*N; longitude 90.428*W sediment Northern Gulf of Mexico Hypoxia can Alter Sediment Communities of Nitrifying Archaea 3 below see level 6.79 3.40 126.20 213.39 70.1 132.1 0.04 0.92 1.97 33.35 120.31 12.45 1.16 0.03 62.5 nd
description
marine metagenome
organism
16S amplicon sequences from marine sediments
scientific_name
Northern Gulf of Mexico Hypoxia can Alter Sediment Communities of Nitrifying Archaea
title