PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2024-08-20
ENA first public
ERC000047
ENA-CHECKLIST
University of Derby
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS20899599
SRA accession
fa8cda82-a7d0-4371-b318-c42b95dbc109
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
UNIVERSITY OF DERBY
barcoding center
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
KRISTEN MARHAVER
collected_by
CARIBBEAN RESEARCH AND MANAGEMENT OF BIODIVERSITY FOUNDATION
collecting institution
2018-09-07
collection date
98.9
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
1.1
%
contamination score
adult coral tissue
environmental medium
USA
geographic location (country and/or sea)
27.78
DD
geographic location (latitude)
-82.40
DD
geographic location (longitude)
FLORIDA | TAMPA
geographic location (region and locality)
Closed system at Florida Aquarium's Center for Conservation (27.779088, -82.404478)
habitat
juvenile
host life stage
Acropora palmata
host scientific name
not collected
host sex
6131
host taxid
KERI O'NEIL
identified_by
The Florida Aquairum
identifier_affiliation
metagenome-assembled genome
investigation type
Coral: Acropora palmata
isolation_source
marine benthic biome
local environmental context
coral metagenome
metagenomic source
34
number of standard tRNAs extracted
Candidatus Aquarickettsia rohweri
organism
WHOLE ORGANISM
organism part
ASG
project name
HAMMER AND CHISEL
sample collection method
SAMEA115940651
sample derived from
Candidatus Aquarickettsia rohweri
scientific_name
Pacbio Sequel II
sequencing method
UDUK0000181
specimen_id
NOT_PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
fa8cda82-a7d0-4371-b318-c42b95dbc109-asg-MAGScoT_cleanbin_000001
title
jaAcrPala1.Aquarickettsia_rohweri_1
tolid