Plant
BioSampleModel
2023-07-21T00:39:58Z
ENA-FIRST-PUBLIC
2023-07-21T00:39:58Z
ENA-LAST-UPDATE
SAMN36502840
External Id
pda|brian.smart@orcid
INSDC center name
2023-07-21T00:39:58Z
INSDC first public
2023-07-21T00:39:58Z
INSDC last update
public
INSDC status
SRS18351218
SRA accession
Maple Grove Lewis Flax
Submitter Id
NCBI
broker name
GRIN
collected_by
2020
collection_date
Maple Grove
cultivar
This study presents a high-quality, chromosome-scale assembly of the L. lewisii (2n = 2x = 18) genome, derived from PacBio HiFi and Dovetail Omni-C sequencing of the Maple Grove variety. The initial assembly contained 642,903,787 base pairs across 2,924 scaffolds. Following HiRise scaffolding, the final assembly contained 643,041,835 base pairs, distributed across 1,713 scaffolds, yielding an N50 contig length of 66,209,717 base pairs. Annotation of the assembly revealed 38,808 genes, including 37,599 protein-coding genes. Among these, 7,108 had functions related to transposable elements, with detectable expression in at least one tissue type noted for 805 of these. We also found an intriguing absence of the single-copy TSS1 gene in the L. lewisii genome, potentially linked to its transition from heterostyly to homostyly.
description
Seedling
dev_stage
USA: Millard County, Utah
geo_loc_name
39.023 N 112.078 W
lat_lon
Linum lewisii
organism
Linum lewisii
scientific_name
Leaf
tissue
Chromosome-scale Genome Assembly of Lewis Flax (Linum lewisii Pursh.)
title