PROKKA (version 1.14.6)
16S recovery software
No
16s recovered
2024-08-20
ENA first public
ERC000050
ENA-CHECKLIST
University of Derby
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS20899597
SRA accession
d29397e6-cf6b-4995-b176-f71fe1cdf907
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
UNIVERSITY OF DERBY
barcoding center
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
KRISTEN MARHAVER
collected_by
CARIBBEAN RESEARCH AND MANAGEMENT OF BIODIVERSITY FOUNDATION
collecting institution
2018-09-07
collection date
73.71
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
4.48
%
contamination score
adult coral tissue
environmental medium
USA
geographic location (country and/or sea)
27.78
DD
geographic location (latitude)
-82.40
DD
geographic location (longitude)
FLORIDA | TAMPA
geographic location (region and locality)
Closed system at Florida Aquarium's Center for Conservation (27.779088, -82.404478)
habitat
juvenile
host life stage
Acropora palmata
host scientific name
not collected
host sex
6131
host taxid
KERI O'NEIL
identified_by
The Florida Aquairum
identifier_affiliation
metagenome-assembled genome
investigation type
Coral: Acropora palmata
isolation_source
marine benthic biome
local environmental context
coral metagenome
metagenomic source
32
number of standard tRNAs extracted
Leptolyngbyaceae cyanobacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
HAMMER AND CHISEL
sample collection method
SAMEA115940651
sample derived from
Leptolyngbyaceae cyanobacterium
scientific_name
Pacbio Sequel II
sequencing method
UDUK0000181
specimen_id
NOT_PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
d29397e6-cf6b-4995-b176-f71fe1cdf907-asg-MAGScoT_cleanbin_000002
title
jaAcrPala1.Leptolyngbyaceae_cyanobacterium_1
tolid