LRS.III.R
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.soil
BioSampleModel
2023-07-27T00:05:43Z
ENA-FIRST-PUBLIC
2023-07-27T00:05:43Z
ENA-LAST-UPDATE
SAMN31639818
External Id
pda|vcerecetto
INSDC center name
2023-07-27T00:05:43Z
INSDC first public
2023-07-27T00:05:43Z
INSDC last update
public
INSDC status
biological replicate3
Replicate
SRS15690999
SRA accession
LRS.III.R
Submitter Id
faltante
agrochem_addition
No colectado
al_sat
NA
al_sat_meth
NA
altitude
NA
animal_gut
Annual mean: 1379 ± 58 mm (no seasonality within the year)
annual_season_precpt
Annual Mean maximum: 23.0 ± 0.1°C, annual mean minimum: 11.3 ± 0.6 °C (January (warmest): 23.0 ± 0.5°C/ July (coldest): 10.9 ± 0.9 °C)
annual_season_temp
NCBI
broker name
2018
collection_date
Festuca arundinacea-Trifolium repens-Lotus sp./Triticum aestivum L./Sorghum bicolor L./ Avena sativa L. /Glycine max L.
crop_rotation
small grains
cur_land_use
oat
cur_vegetation
NA
cur_vegetation_meth
NA
depth
Long Rotation, Precrop Sorghum, Rhizosphere, Replicate III
description
0.5g
dna_extraction_amount
FastDNA SPIN kit for soil
dna_extraction_method
poorly
drainage_class
57 m
elev
Organism
env_broad_scale
Organism
env_local_scale
Rhizosphere
env_medium
No colectado
extreme_event
No colectado
extreme_salinity
Typic Argiudolls
fao_class
No colectado
fire
No colectado
flooding
Uruguay
geo_loc_name
No colectado
heavy_metals
No colectado
heavy_metals_meth
A horizon
horizon
faltante
horizon_meth
Oat
host_common_name
Avena sativa L.
host_latin_name
NA
isolation_source
33.15544 S 54.29281 W
lat_lon
NA
link_class_info
http://www.inia.uy/gras/Clima/Banco-datos-agroclimatico
link_climate_info
NA
local_class
NA
local_class_meth
No colectado
microbial_biomass
NA
microbial_biomass_meth
NA
misc_param
NA
omics_observ_id
metagenome
organism
NA
ph
NA
ph_meth
No
pool_dna_extracts
Natural grasslands (before 1995)
previous_land_use
Faltante
previous_land_use_meth
NA
salinity_meth
NA
samp_collect_device
Roots of three oat plants per replicate were briefly washed with distilled water to remove loosely adhering soil and pooled to a composite sample. Rhizosphere was recovered from 5 g of roots by Stomacher treatment followed by centrifugation according to Schreiter et al. (2014). Rhizosphere pellets were stored at −20◦C until TC-DNA extraction.
samp_mat_process
5g
samp_size
metagenome
scientific_name
Illumina MiSeq
sequencing_platform
NA
sieving
NA
size_frac
NA
slope_aspect
NA
slope_gradient
NA
soil_type
NA
soil_type_meth
NA
source_material_id
stored at -20°C, extraction 5 moths later
store_cond
NA
texture
Faltante
texture_meth
NA
tot_n_meth
NA
tot_nitro
NA
tot_org_c_meth
NA
tot_org_carb
NA
water_content_soil
NA
water_content_soil_meth