3Ncs
0.78
A260_to_A230
1.888
A260_to_A280
colon_scraping
Anatomical.location
TGGATTCA
Barcode
Metagenome or environmental
BioSampleModel
3
Cage_number
16.148
DNA_extract_concentration_ng.uL
6
DNA_extraction_batch
2021-07-15T00:00:00
DNA_extraction_date
2023-07-27T00:05:52Z
ENA-FIRST-PUBLIC
2023-07-27T00:05:52Z
ENA-LAST-UPDATE
SAMN32255323
External Id
pda|slpelleg
INSDC center name
2023-07-27T00:05:52Z
INSDC first public
2023-07-27T00:05:52Z
INSDC last update
public
INSDC status
GTGYCAGCMGCCGCGGTAA
LinkerPrimerSequence
3N
Mouse_ID
8
PMA_batch
2021-01-19T00:00:00
PMA_date
CCGYCAATTYMTTTRAGTTT
ReversePrimer
SRS16208873
SRA accession
1
Sequencing batch
2022-01-11T00:00:00
Sequencing_date
male
Sex
3Ncs
Submitter Id
AIN93G
Treatment
NCBI
broker name
2021-01-19
collection_date
USA: Orono, Maine
geo_loc_name
Mus musculus
host
intestines
isolation_source
44.9019 N 68.6688 W
lat_lon
mouse gut metagenome
organism
anaerobe
rel_to_oxygen
surgical removal of organ and sampling with sterile tools
samp_collect_device
After euthanasia, digesta (lumen contents) and epithelial-associated (tissue scrapings) microbial community samples were collected from the jejunum, cecum (contents only), and colon for PMA-pretreatment to preclude later amplicifation of relic/dead DNA, then samples underwent DNA extraction and community sequencing.
samp_mat_process
1 cm2 square surface area
samp_size
mouse gut metagenome
scientific_name
DSS_mouse_model_gut_bacterial_community
title