SRP.VI.BS
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.soil
BioSampleModel
2023-07-27T00:05:42Z
ENA-FIRST-PUBLIC
2023-07-27T00:05:42Z
ENA-LAST-UPDATE
SAMN31639791
External Id
pda|vcerecetto
INSDC center name
2023-07-27T00:05:42Z
INSDC first public
2023-07-27T00:05:42Z
INSDC last update
public
INSDC status
biological replicate 6
Replicate
SRS15690969
SRA accession
SRP.VI.BS
Submitter Id
faltante
agrochem_addition
No colectado
al_sat
NA
al_sat_meth
NA
altitude
NA
animal_gut
Annual mean: 1379 ± 58 mm (no seasonality within the year)
annual_season_precpt
Annual Mean maximum: 23.0 ± 0.1°C, annual mean minimum: 11.3 ± 0.6 °C (January (warmest): 23.0 ± 0.5°C/ July (coldest): 10.9 ± 0.9 °C)
annual_season_temp
NCBI
broker name
2018
collection_date
Trifolium pratense L./Avena sativa L./Sorghum bicolor L./ Triticum aestivum L./Glycine max L.
crop_rotation
small grains
cur_land_use
oat
cur_vegetation
NA
cur_vegetation_meth
0-15 cm
depth
Short Rotation, Precrop Pasture, Bulk Soil, Replicate VI
description
0.5g
dna_extraction_amount
FastDNA SPIN kit for soil
dna_extraction_method
poorly
drainage_class
57 m
elev
Mineral
env_broad_scale
Soil
env_local_scale
Bulk Soil
env_medium
No colectado
extreme_event
No colectado
extreme_salinity
Typic Argiudolls
fao_class
No colectado
fire
No colectado
flooding
Uruguay
geo_loc_name
No colectado
heavy_metals
No colectado
heavy_metals_meth
A horizon
horizon
faltante
horizon_meth
NA
host_common_name
NA
host_latin_name
NA
isolation_source
33.15544 S 54.29281 W
lat_lon
NA
link_class_info
http://www.inia.uy/gras/Clima/Banco-datos-agroclimatico
link_climate_info
NA
local_class
NA
local_class_meth
No colectado
microbial_biomass
NA
microbial_biomass_meth
NA
misc_param
NA
omics_observ_id
metagenome
organism
Faltante
ph
Beretta et al. (2014)
ph_meth
No
pool_dna_extracts
Natural grasslands (before 1995)
previous_land_use
Faltante
previous_land_use_meth
NA
salinity_meth
soil core auger (2 cm diameter)
samp_collect_device
15–20 soil core samples per replicate were randomly collected between plants with a soil core auger (2 cm diameter) at 0–15 cm depth, mixed and homogenized by sieving with 5 mm mesh size (roots and stones were removed) immediately after sampling. For microbial analysis, samples were stored at −20◦C until total community DNA (TC-DNA) extraction.
samp_mat_process
No colectado
samp_size
metagenome
scientific_name
Illumina MiSeq
sequencing_platform
Sieving with 5 mm mesh size
sieving
NA
size_frac
NA
slope_aspect
NA
slope_gradient
NA
soil_type
NA
soil_type_meth
NA
source_material_id
stored at -20°C, extraction 5 moths later
store_cond
39% sand, 39% silt, 22% clay
texture
Faltante
texture_meth
combustion at 900ºC and subsequent detection of N2 by thermal conductivity
tot_n_meth
No colectado
tot_nitro
Wright & Bailey (2001)
tot_org_c_meth
No colectado
tot_org_carb
No colectado
water_content_soil
NA
water_content_soil_meth