SARS-CoV-2: wastewater surveillance
BioSampleModel
2023-08-10T00:08:18Z
ENA-FIRST-PUBLIC
2023-08-10T00:08:18Z
ENA-LAST-UPDATE
SAMN36908981
External Id
pda|kittychase
INSDC center name
2023-08-10T00:08:18Z
INSDC first public
2023-08-10T00:08:18Z
INSDC last update
public
INSDC status
SRS18559567
SRA accession
071623_51
Submitter Id
43633
_ww_population
NCBI
broker name
North Carolina Department of Health and Human Services
collected_by
2023-07-17
collection_date
071623_51
collection_site_id
10:28:00
collection_time
40
collection_volume
membrane filtration with acidification and mgcl2
concentration_method
TEST SUBMISSION for NCSLPH
description
bcov vaccine
extraction_control
qiagen allprep powerviral dna/rna kit
extraction_method
USA: North Carolina
geo_loc_name
wastewater
isolation_source
wastewater metagenome
organism
Wastewater sequencing of NC Wastewater Monitoring Network samples
project_name
public health surveillance community-level
purpose_of_ww_sampling
public health surveillance for the NC Wastewater Monitoring Network
purpose_of_ww_sequencing
wastewater metagenome
scientific_name
North Carolina State Laboratory of Public Health
sequenced_by
TEST - hendersonville
title
pepper mild mottle virus
ww_endog_control_1
racki et al. 2014; haramoto et al 201
ww_endog_control_1_protocol
2.404
ww_flow
census blocks clipped to wastewater service area polygon
ww_population_source
no
ww_pre_treatment
24
ww_sample_duration
raw wastewater
ww_sample_matrix
wastewater treatment plant
ww_sample_site
composite
ww_sample_type
NC
ww_surv_jurisdiction
SLPH000704
ww_surv_system_sample_id
SARS-CoV-2
ww_surv_target_1
86400
ww_surv_target_1_conc
copies/L
ww_surv_target_1_conc_unit
N gene (N1)
ww_surv_target_1_gene
yes
ww_surv_target_1_known_present
lu et al. us cdc real-time reverse transcription pcr panel for detection of severe acutre respirtaory syndrome coronavirus 2- volume 26, number 8 - august 2020 - emerging infectious diseases journal - cdc
ww_surv_target_1_protocol
SARS-CoV-2
ww_surv_target_2
86400
ww_surv_target_2_conc
copies/L
ww_surv_target_2_conc_unit
N gene (N2)
ww_surv_target_2_gene
yes
ww_surv_target_2_known_present
4
ww_temperature