PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2024-08-22
ENA first public
ERC000050
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS20906485
SRA accession
97584bb1-5d85-4e65-9f74-1234f0ed6189
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
NICOLE WEBSTER
collected_by
AIMS
collecting institution
2020-11-01
collection date
96.53
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
8.91
%
contamination score
9.0
m
depth
adult sponge tissue
environmental medium
Australia
geographic location (country and/or sea)
18.97
DD
geographic location (latitude)
146.56
DD
geographic location (longitude)
Queensland | Great Barrier Reef | Havanna Island
geographic location (region and locality)
Reef
habitat
adult
host life stage
Xestospongia bergquistia
host scientific name
not collected
host sex
1088918
host taxid
NICOLE WEBSTER
identified_by
AIMS
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Xestospongia bergquistia
isolation_source
marine benthic biome
local environmental context
sponge metagenome
metagenomic source
59
number of standard tRNAs extracted
Dehalococcoidia bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA115947501
sample derived from
Dehalococcoidia bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000118
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
97584bb1-5d85-4e65-9f74-1234f0ed6189-asg-MAGScoT_cleanbin_000193
title
odXesBerg1.Dehalococcoidia_39
tolid