2024-08-27
ENA first public
ERC000033
ENA-CHECKLIST
SAMEA110339045
External Id
EPI_ISL_13658021
GISAID Accession ID
VEO Monekypox analysis group
INSDC center name
2022-07-12T07:28:30Z
INSDC last update
public
INSDC status
ERS12436129
SRA accession
run687_bc12
Submitter Id
ERASMUS MC, UNIVERISTY MEDICAL CENTER
broker name
VEO Monekypox analysis group
collecting institution
2022-06-23
collection date
VEO Monekypox analysis group
collector name
Monkeypox
common name
Nanopore sequencing was performed on clinical material after DNAse treatment. In short, DNA was extracted using Ampure Beads after which an end repair step was performed (Ultra II End-prep NEBNext). Adapters were ligated, Ampure bead washes were performed twice and a random PCR was performed (following the SQK-PBK004 protocol from Nanopore).
description
Netherlands
geographic location (country and/or sea)
not collected
geographic location (region and locality)
Human
host common name
not collected
host health state
Homo sapiens
host scientific name
not collected
host sex
restricted access
host subject id
hMpxV/Netherlands/un-EMC-NL007/2022
isolate
not collected
isolation source host-associated
Monkeypox virus
organism
active surveillance in response to outbreak
sample capture status
Monkeypox virus
scientific_name
Monkeypox whole-genome sequencing from Netherlands 2022
title