2024-09-02
ENA first public
ERC000024
ENA-CHECKLIST
SAMEA111280469
External Id
Microbial ecology
INSDC center name
2022-09-02T15:54:51Z
INSDC last update
public
INSDC status
not applicable
SIS transit time level
not applicable
SIS vadose zone thickness level
ERS13378066
SRA accession
CTRL-Flt0-45
Submitter Id
anthropogenic environment (ENVO:01000313)
broad-scale environmental context
2015-09-15
collection date
0
m
depth
Negative control sample, filter used to recover bacteria from water and resuspended biofilm
description
300
m
elevation
laboratory supplies
environmental medium
France
geographic location (country and/or sea)
45.79243559
DD
geographic location (latitude)
4.70678211
DD
geographic location (longitude)
Auvergne-Rhone-Alpes administrative region, Rhone department, Marcy-l'Etoile town
geographic location (region and locality)
mimarks-survey
investigation type
laboratory environment (ENVO:01001405)
local environmental context
blank sample
organism
ILMN-PTCF2 (GTGCCGYTRTGYGGCAAGA) and ILMN-PTCF2m (GTGCCCYTRTGYGGCAAGT); ILMN-PTCR2 (ATCAKYGCGGCGCGGTCRTA) and ILMNPTCR2m (ATGAGBGCTGCCCTGTCRTA)
pcr primers
Impact of urban runoffs discharged in aquifers by stormwater infiltration systems (PRJEB55755) ANR FROG
project name
blank sample
scientific_name
Sequencing by synthesis (Illumina MiSeq Illumina V3)
sequencing method
Thiopurine S-methyltransferase (tpm)
target gene
200-235 bp, including the VPLCGK and YDRAAM conserved domains
target subfragment
0.45 micrometer sterile filter
title
water
water environmental package