2024-09-19
ENA first public
ERC000047
ENA-CHECKLIST
SAMEA115098520
External Id
Spribille Lab
INSDC center name
2024-01-12T00:35:08Z
INSDC last update
public
INSDC status
ERS17733267
SRA accession
CBS139747_Sportherm_bins
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;kmer set 21,31,51,71,81,101,127, default parameters otherwise
assembly software
coverage and kmer frequencies
binning parameters
CONCOCT 1.1.0
binning software
forest
broad-scale environmental context
2012-08-22
collection date
96.24
%
completeness score
eukcc2 2.1.0
completeness software
0.38
%
contamination score
This sample represents a MAG of Sporothrix thermara derived from the metagenomic sample ERS15570766
description
rotten material surrounding beetle tunnels of diseased Euphorbia ingens
environmental medium
South Africa
geographic location (country and/or sea)
-24.869063
DD
geographic location (latitude)
28.242517
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
Culture CBS 139747
isolation_source
rotting wood
local environmental context
fungus metagenome
metagenomic source
Sporothrix thermara
organism
PRJEB62835
project name
ERS15570766
sample derived from
Sporothrix thermara
scientific_name
pyrosequencing
sequencing method
multi-marker approach
taxonomic identity marker
Sporothrix thermara MAG derived from the metagenomic sample ERS15570766
title