2024-09-19
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21058354
SRA accession
spire_mag_00875407
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2014-05-07
collection date
99.78
%
completeness score
checkm2 0.1.3
completeness software
7.2
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR8800844 of study SRP189794.
description
stool
environmental medium
USA
geographic location (country and/or sea)
30.40000000
DD
geographic location (latitude)
-91.12000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
Metagenomic shotgun and V4 16S rRNA amplicon sequencing of human gut communities during the baseline diet (BD) and ketogenic diet (KD) in crossover study.</p><p>V4 16S rRNA amplicon sequencing of mouse gut communities studying the impact of the ketogenic diet and ketogenesis on the gut microbiome and immune responses.
project name
SAMN11268252
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_00875407
title