2024-09-19
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21062064
SRA accession
spire_mag_01464814
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2016
collection date
61.05
%
completeness score
checkm2 0.1.3
completeness software
0.24
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run ERR2843691 of study ERP110757.
description
not specified
environmental medium
China
geographic location (country and/or sea)
23.70000000
DD
geographic location (latitude)
113.15000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
Ankylosing spondylitis is a disease that is still hard to cure. It is often found in teenagers and has a great impact on their image and life. The differences between gut microbes and healthy people in Ankylosing Spondylitis patients have been analyzed based on data and some individualized analyses.
project name
SAMEA4974232
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01464814
title