2024-09-19
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21056228
SRA accession
spire_mag_00180560
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2013-01-18
collection date
90.91
%
completeness score
checkm2 0.1.3
completeness software
4.86
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR5275465 of study SRP100446.
description
stool
environmental medium
not provided
geographic location (country and/or sea)
missing: third party data
DD
geographic location (latitude)
missing: third party data
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
The presence of advanced fibrosis in nonalcoholic fatty liver disease (NAFLD) is the most important predictor of liver mortality. The aim of this study was to examine the diagnostic</p><p>accuracy of a gut-microbiota derived metagenomic signature for detecting the presence of advanced fibrosis in NAFLD. In this prospective study, we characterized the microbiome signatures associated with advanced fibrosis (defined as stage 3 or 4 fibrosis) in uniquely well characterized biopsy- and imaging-phenotyped patients with NAFLD. Gut microbiome</p><p>compositions of the patients were determined using whole-genome shotgun sequencing of DNA extracted from stool samples.
project name
SAMN06328477
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_00180560
title