2024-09-19
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21060777
SRA accession
spire_mag_01113695
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2012
collection date
58.68
%
completeness score
checkm2 0.1.3
completeness software
1.14
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic runs SRR6876204,SRR6876218 of study SRP135559.
description
stool
environmental medium
USA
geographic location (country and/or sea)
42.58
DD
geographic location (latitude)
-85.39
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
Gut microbial profiles from 7 children with ulcerative colitis were characterized by 16S rRNA gene sequencing before and after fecal microbiota transplantation.
project name
SAMN08707440
sample derived from
Phocaeicola vulgatus
scientific_name
NextSeq 500,Illumina MiSeq
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01113695
title