2024-09-19
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21060078
SRA accession
spire_mag_01006265
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2015-08-26
collection date
99.96
%
completeness score
checkm2 0.1.3
completeness software
0.52
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR9224125 of study SRP200548.
description
stool
environmental medium
USA
geographic location (country and/or sea)
42.36000000
DD
geographic location (latitude)
-71.06000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
We introduce a comprehensive library of human gut bacteria: a library of 7,758 bacterial isolates, characterized by 16S sanger sequences, which were obtained from healthy FMT donors recruited in the Boston area. This library covers most of the phylogenetic diversity found in the human gut and contains extensive strain diversity. Isolates can be requested at this address: XXX.</p><p>We report Whole Genome Sequences (WGSs) for a phylogenetically-comprehensive subset of these isolates, representing a library of 3,632 WGSs, to enable researchers to test and predict phenotypes in vitro and in vivo. We also provide longitudinal 16S (1,169 samples from 90 donors), metagenomic (564 samples from 84 donors) and metabolomic data (179 samples from 83 donors) for a large cohort of FMT donors.
project name
SAMN11950473
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01006265
title