2024-09-19
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21057528
SRA accession
spire_mag_00553770
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2010
collection date
94.84
%
completeness score
checkm2 0.1.3
completeness software
2.64
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR6468528 of study SRP129027.
description
not specified
environmental medium
USA
geographic location (country and/or sea)
missing: third party data
DD
geographic location (latitude)
missing: third party data
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
This project collected and profiled paired shotgun metagenomes and LC-MS metabolomes from subjects with inflammatory bowel disease (IBD) and non-IBD controls. We identified and validated differentially abundant (DA) features in the metagenomes and metabolomes of IBD subjects, and described putatively mechanistic associations between DA microbes, enzymes, and metabolites.
project name
SAMN08049661
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_00553770
title