2024-09-19
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21056394
SRA accession
spire_mag_00329004
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2017-03-04
collection date
59.56
%
completeness score
checkm2 0.1.3
completeness software
7.12
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run DRR162436 of study DRP005367.
description
not specified
environmental medium
Japan
geographic location (country and/or sea)
34.68500000
DD
geographic location (latitude)
135.10150000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
The gut microbiota has been linked to cardiovascular diseases. This study investigated the compositional and functional capacity of the gut microbiome in relation to cardiovascular diseases. We perform a metagenome-wide association study on stools from individuals with and without cardiovascular diseases.
project name
SAMD00149248
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_00329004
title