2024-09-19
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21056359
SRA accession
spire_mag_00294216
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2017-05-11
collection date
79.73
%
completeness score
checkm2 0.1.3
completeness software
0.73
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR7624267 of study SRP154898.
description
rectal swab
environmental medium
USA
geographic location (country and/or sea)
34.05000000
DD
geographic location (latitude)
-118.24000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
Using a multi-omics approach, we identified microbiome-derived</p><p>biochemicals and metagenomic functions associated with progressive hepatic pathology and fibrosis in Latino children (N=241). These findings point to potential therapeutic targets in NASH and hepatic injury.
project name
SAMN09656824
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina MiSeq
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_00294216
title