2024-09-19
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21056381
SRA accession
spire_mag_00305577
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2013-05-23
collection date
63.16
%
completeness score
checkm2 0.1.3
completeness software
0.04
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run ERR636392 of study ERP007090.
description
stool
environmental medium
Sweden
geographic location (country and/or sea)
63.81857700
DD
geographic location (latitude)
20.29661100
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
We used untargeted metagenomic Illumina sequencing to study fecal samples of 35 Swedish healthcare students, taken before and after embarking on a student exchange program to the Indian peninsula or central Africa. The students were not taking antibiotics between sampling points. Antibiotic resistance gene frequencies were investigated in all samples.
project name
SAMEA2784491
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_00305577
title