2024-09-19
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21061254
SRA accession
spire_mag_01241981
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2015-07-25
collection date
99.11
%
completeness score
checkm2 0.1.3
completeness software
8.16
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run ERR2608639 of study ERP104786.
description
stool
environmental medium
China
geographic location (country and/or sea)
missing: third party data
DD
geographic location (latitude)
missing: third party data
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
The composition of the gut microbiota has been linked to many central nervoussystem disorders, including neuropsychiatric disorders such as autism spectrumdisorders (ASDs). Several studies have shown that changes in the microbiomemay contribute to the symptoms of ASD, and a recently published study showedthat fecal microbiota transfer therapy significantly improved autism symptoms.We performed shotgun metagenome sequencing of ASD patients (n = 43) and TD children (n = 31).
project name
SAMEA4702379
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01241981
title