2024-09-19
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21060780
SRA accession
spire_mag_01123119
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2013-10-03
collection date
95.01
%
completeness score
checkm2 0.1.3
completeness software
0.26
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR7293309 of study SRP150299.
description
stool
environmental medium
Mozambique
geographic location (country and/or sea)
-25.40000000
DD
geographic location (latitude)
32.80000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
Human Fecal Metagenome from primarily and chronically HIV infected and non-infected subjects was sequenced using both illumina(MiSeq) sequencing and 16s V3-V4 region and shotgun
project name
SAMN09355562
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina MiSeq
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01123119
title