2024-09-19
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21057215
SRA accession
spire_mag_00394637
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2009
collection date
59.78
%
completeness score
checkm2 0.1.3
completeness software
3.17
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic runs ERR2861969,ERR3013843 of study ERP108811.
description
not specified
environmental medium
not provided
geographic location (country and/or sea)
50.85
DD
geographic location (latitude)
5.69
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
To investigate the gut microbial characteristics of healthy Dutch children at 6-9 years as well as the relationship between their gut microbiota and multiple phenotypic factors, we collected stool samples from 281 children aged 6-9 years (mean age 7.25 years) enrolled in the KOALA Birth Cohort Study.
project name
SAMEA4813839
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_00394637
title