2024-09-19
ENA first public
ERC000047
ENA-CHECKLIST
Spribille Lab
INSDC center name
public
INSDC status
ERS20917958
SRA accession
public_ERR4179390_concoct_bin.75
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes_v3.13
assembly software
default
binning parameters
metaWRAP_v.1.2
binning software
Thallus of Lobaria pulmonaria lichen
broad-scale environmental context
not provided
collection date
97.87
%
completeness score
EukCC_v2
completeness software
0.0
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR4179390 of study ERP121945.
description
lichen thallus
environmental medium
not provided
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
lichen metagenome
isolation_source
lichen thallus
local environmental context
lichen metagenome
metagenomic source
Symbiochloris sp.
organism
Bacteria have recently emerged as important constituents of the lichen holobiont, which is defined as a symbiotic association of a mycobiont (fungus) and a photobiont (green alga and/or cyanobacterium). Lichens are classical models for symbiosis, now they are used to get mechanistic insights into native microbiome functioning. A high proportion of the present bacteria remains uncultivable with current approaches, thus their ecological function in globally widespread lichenized fungi is still mostly unknown. In the present study, 29 bacterial metagenome-assembled genome (MAG) sequences were constructed from three different lichenized fungi metagenomes and taxonomically classified to three phyla. This resource provides a new basis to further shed light on the ecological functions of bacterial symbionts in lichenized fungi.
project name
SAMEA6862454
sample derived from
Symbiochloris sp.
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: public_ERR4179390_concoct_bin.75
title