2024-09-19
ENA first public
ERC000047
ENA-CHECKLIST
Spribille Lab
INSDC center name
public
INSDC status
ERS20915212
SRA accession
public_SRR7232211_metawrap_bin.1
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
metaSPAdes_v3.13
assembly software
default
binning parameters
metaWRAP_v.1.2
binning software
Thallus of Letharia vulpina lichen
broad-scale environmental context
2014-04-01
collection date
97.22
%
completeness score
CheckM_v1.1.3
completeness software
0.75
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR7232211 of study SRP149293.
description
lichen thallus
environmental medium
USA
geographic location (country and/or sea)
47.30000000
DD
geographic location (latitude)
-114.80000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
lichen metagenome
isolation_source
lichen thallus
local environmental context
lichen metagenome
metagenomic source
uncultured Acetobacteraceae bacterium
organism
The study investigates the constant components of wolf lichen symbioses.
project name
SAMN09279528
sample derived from
uncultured Acetobacteraceae bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: public_SRR7232211_metawrap_bin.1
title