2024-09-19
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21060795
SRA accession
spire_mag_01132338
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
missing: third party data
collection date
71.57
%
completeness score
checkm2 0.1.3
completeness software
5.56
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic runs SRR2193889,SRR2227839,SRR2227856,SRR2227863,SRR2227972 of study SRP029441.
description
stool
environmental medium
not provided
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
This study will characterize the role of human-associated bacteria in health and disease from a sample set collected in Fiji. The study seeks to find out how people share benign bacteria that live in guts, mouths and skin with each other and with their domestic animals and surroundings. There are several diseases that are spread by bacteria between humans and between humans and their livestock. Through this study, the researchers want to determine how much bacterial sharing goes on between humans and their domestic animals.
project name
SAMN02334202
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01132338
title