2024-09-19
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21058391
SRA accession
spire_mag_00890855
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2016-07-20
collection date
50.64
%
completeness score
checkm2 0.1.3
completeness software
0.06
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR6166694 of study SRP114847.
description
stool
environmental medium
India
geographic location (country and/or sea)
23.26000000
DD
geographic location (latitude)
77.41000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
Through Next Generation Sequencing we delineated the composition and functional detail of gut microbiota in various world populations. The relationship of the gut microbiota to health and disease is one of the primary goals of human microbiome studies. The microbiota of the Indian population is of particular interest to researchers because India encompasses a unique diversity in environmental conditions, diet and ethnic geographical population. In this study, we conduct 16s rRNA sequencing, shotgun metagenomic and metabolomics analysis of 110 healthy Indian subjects, which reveals novel gut microbial community structures
project name
SAMN07448982
sample derived from
Phocaeicola vulgatus
scientific_name
NextSeq 500
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_00890855
title