2024-09-19
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21057324
SRA accession
spire_mag_00415877
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
missing: third party data
collection date
86.78
%
completeness score
checkm2 0.1.3
completeness software
0.88
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR7351974 of study SRP096371.
description
stool
environmental medium
not provided
geographic location (country and/or sea)
missing: third party data
DD
geographic location (latitude)
missing: third party data
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
In this study, pregnant women (from 35 weeks gestation until their infants were 6 months old) and their infants (from birth until 2 years of age) were randomly assigned to receive a probiotic (either Bifidobacterium animalis subsp lactis HN019, Lactobaciilus rhamnosus HN001, or placebo). Stool shotgun metagenomes were sequenced shortly after birth, and at 3, 12, and 24 months of age. This dataset allows examination of how early life probiotic intervention, mode of delivery, and other metadata contribute to risk of eczema at 2 years.
project name
SAMN09278436
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_00415877
title