2024-09-19
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21058245
SRA accession
spire_mag_00830519
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
missing: third party data
collection date
95.0
%
completeness score
checkm2 0.1.3
completeness software
0.23
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR13697078 of study SRP162022.
description
stool
environmental medium
USA
geographic location (country and/or sea)
40.76410000
DD
geographic location (latitude)
-73.95680000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
Microbiota of allo-HSCT patients and in the setting of Autologous Fecal Microbiota Transplant (auto-FMT) at MSKCC Raw sequence reads
project name
SAMN07561826
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina HiSeq 1000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_00830519
title