2024-09-19
ENA first public
ERC000047
ENA-CHECKLIST
Spribille Lab
INSDC center name
public
INSDC status
ERS20918168
SRA accession
public_SRR13125762_concoct_bin.37
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes_v3.13
assembly software
default
binning parameters
metaWRAP_v.1.2
binning software
Thallus of Usnea aurantiacoatra lichen
broad-scale environmental context
not provided
collection date
93.23
%
completeness score
EukCC_v2
completeness software
0.38
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13125762 of study SRP294009.
description
lichen thallus
environmental medium
Antarctica
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
lichen metagenome
isolation_source
lichen thallus
local environmental context
lichen metagenome
metagenomic source
Usnea aurantiacoatra
organism
Nine Parmeliaceae lichens genome sequencing data used in:"Using target enrichment sequencing to study the higher-level phylogeny of the largest lichen-forming fungi family: Parmeliaceae (Ascomycota)"
project name
SAMN16882156
sample derived from
Usnea aurantiacoatra
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: public_SRR13125762_concoct_bin.37
title