2024-09-19
ENA first public
ERC000047
ENA-CHECKLIST
Spribille Lab
INSDC center name
public
INSDC status
ERS20915116
SRA accession
public_SRR14722251_metawrap_bin.1
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
metaSPAdes_v3.13
assembly software
default
binning parameters
metaWRAP_v.1.2
binning software
Thallus of Trapelia coarctata lichen
broad-scale environmental context
2016-05-01
collection date
93.97
%
completeness score
CheckM_v1.1.3
completeness software
0.17
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR14722251 of study SRP322526.
description
lichen thallus
environmental medium
USA
geographic location (country and/or sea)
35.48280000
DD
geographic location (latitude)
-83.55970000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
lichen metagenome
isolation_source
lichen thallus
local environmental context
lichen metagenome
metagenomic source
uncultured Acidobacteriaceae bacterium
organism
Genome sequences from the NSF Dimensions in Biodiversity Grant to study the Lichens of the Southern Appalachians
project name
SAMN19302454
sample derived from
uncultured Acidobacteriaceae bacterium
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: public_SRR14722251_metawrap_bin.1
title