2024-09-19
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21060746
SRA accession
spire_mag_01096575
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2012
collection date
96.09
%
completeness score
checkm2 0.1.3
completeness software
0.15
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR7589589 of study SRP155109.
description
stool
environmental medium
India
geographic location (country and/or sea)
11.12710000
DD
geographic location (latitude)
78.65690000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
Normal growth and development in infancy and childhood are intimately linked to an intact intestine and absorptive system. A high prevalence of growth retardation in low-income countries has been linked to a dysfunction of the intestine termed environmental enteropathy (EE). We hypothesized that children living in a contaminated environment would tolerate RS food supplements, that they would ferment the RS to SCFA, and that the supplemental feeds would have an impact on the fecal microbiome. In this study, we thus compared a naturally occurring RS with a modified (acetylated) RS in a crossover manner, and also evaluated the differences between normally growing and stunted children.
project name
SAMN09690919
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina HiSeq 1000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01096575
title