2024-09-19
ENA first public
ERC000047
ENA-CHECKLIST
Spribille Lab
INSDC center name
public
INSDC status
ERS20914901
SRA accession
public_SRR1531545_metawrap_bin.1
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes_v3.13
assembly software
default
binning parameters
metaWRAP_v.1.2
binning software
Thallus of Leptogium austroamericanum lichen
broad-scale environmental context
2011-07-02
collection date
99.78
%
completeness score
CheckM_v1.1.3
completeness software
1.22
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR1531545 of study SRP045073.
description
lichen thallus
environmental medium
USA
geographic location (country and/or sea)
35.99000000
DD
geographic location (latitude)
-79.01000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
lichen metagenome
isolation_source
lichen thallus
local environmental context
lichen metagenome
metagenomic source
uncultured Nostoc sp.
organism
A lichen is a symbiotic association of a fungus and a photosynthesizing partner, such as a green algae or cyanobacterium. The symbiosis is usually obligate for the fungus. The goal of this study was to generate genome information for phylogenetic analysis from the cultured mycobionts (lichenizing fungi) and lichen thalli spanning the diversity of lichenized groups in the classes Lecanoromycetes, Eurotiomycetes, Dothidiomycetes, Arthoniomycetes and Lichinomycetes. Leptogium austroamericanum is a lichen composed of the lichenizing fungus Leptogium austroamericanum (for which the association is named) and its cyanobacterial photobiont. The metagenome data here include sequences from the lichenizing fungus Leptogium austroamericanum (class Lecanoromycetes, subclass Lecanoromycetidae), the cyanobacterial photobiont, and possibly endolichenic fungi or prokaryotes.
project name
SAMN02943512
sample derived from
uncultured Nostoc sp.
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: public_SRR1531545_metawrap_bin.1
title