2024-09-19
ENA first public
ERC000047
ENA-CHECKLIST
Spribille Lab
INSDC center name
public
INSDC status
ERS20915183
SRA accession
public_SRR12240184_metawrap_bin.1
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes_v3.13
assembly software
default
binning parameters
metaWRAP_v.1.2
binning software
Thallus of Oxnerella safavidiorum lichen
broad-scale environmental context
2016
collection date
82.41
%
completeness score
CheckM_v1.1.3
completeness software
2.15
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12240184 of study SRP272267.
description
lichen thallus
environmental medium
USA
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
lichen metagenome
isolation_source
lichen thallus
local environmental context
lichen metagenome
metagenomic source
uncultured Pedobacter sp.
organism
short, metagnomic reads from lichen thalli
project name
SAMN15548981
sample derived from
uncultured Pedobacter sp.
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: public_SRR12240184_metawrap_bin.1
title