2024-09-19
ENA first public
ERC000047
ENA-CHECKLIST
Spribille Lab
INSDC center name
public
INSDC status
ERS20918176
SRA accession
public_SRR7232212_concoct_bin.0
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes_v3.13
assembly software
default
binning parameters
metaWRAP_v.1.2
binning software
Thallus of Letharia rugosa lichen
broad-scale environmental context
2014-04-02
collection date
86.4
%
completeness score
EukCC_v2
completeness software
3.8
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR7232212 of study SRP149293.
description
lichen thallus
environmental medium
USA
geographic location (country and/or sea)
47.20000000
DD
geographic location (latitude)
-113.90000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
lichen metagenome
isolation_source
lichen thallus
local environmental context
lichen metagenome
metagenomic source
Trebouxia sp.
organism
The study investigates the constant components of wolf lichen symbioses.
project name
SAMN09279527
sample derived from
Trebouxia sp.
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: public_SRR7232212_concoct_bin.0
title