2024-09-19
ENA first public
ERC000047
ENA-CHECKLIST
Spribille Lab
INSDC center name
public
INSDC status
ERS20914900
SRA accession
public_SRR2387885_metawrap_bin.4
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes_v3.13
assembly software
default
binning parameters
metaWRAP_v.1.2
binning software
Thallus of Lasallia pustulata lichen
broad-scale environmental context
2013-05-28
collection date
59.37
%
completeness score
CheckM_v1.1.3
completeness software
0.25
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR2387885 of study SRP063647.
description
lichen thallus
environmental medium
Italy
geographic location (country and/or sea)
41.04610000
DD
geographic location (latitude)
9.44610000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
lichen metagenome
isolation_source
lichen thallus
local environmental context
lichen metagenome
metagenomic source
uncultured Acetobacteraceae bacterium
organism
Draft genome sequence of the lichen-forming fungus Lasallia pustulata (L.) Hoffm. This lichen-forming fungus has a patchy, but wide distribution ranging from southern Europe to northern Scandinavia. It produces gyrophoric acid, a tridepside consisting of three orsellinic acid units. Lasallia genomics has the potential to uncover genes involved in secondary metabolite synthesis and local adaptation.
project name
SAMN03339881
sample derived from
uncultured Acetobacteraceae bacterium
scientific_name
Illumina MiSeq
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: public_SRR2387885_metawrap_bin.4
title