2024-09-19
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21057795
SRA accession
spire_mag_00708214
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2014-11-12
collection date
99.52
%
completeness score
checkm2 0.1.3
completeness software
0.21
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR6517767 of study SRP131624.
description
not specified
environmental medium
China
geographic location (country and/or sea)
29.35000000
DD
geographic location (latitude)
106.33000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
To investigated the gut microbiome in patients with Behcet's disease
project name
SAMN08392138
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_00708214
title