2024-09-19
ENA first public
ERC000047
ENA-CHECKLIST
Spribille Lab
INSDC center name
public
INSDC status
ERS20918068
SRA accession
public_SRR1531569_concoct_bin.26
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes_v3.13
assembly software
default
binning parameters
metaWRAP_v.1.2
binning software
Thallus of Peltula cylindrica lichen
broad-scale environmental context
2011-07
collection date
97.37
%
completeness score
EukCC_v2
completeness software
0.38
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR1531569 of study SRP045075.
description
lichen thallus
environmental medium
USA
geographic location (country and/or sea)
35.98000000
DD
geographic location (latitude)
-78.39000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
lichen metagenome
isolation_source
lichen thallus
local environmental context
lichen metagenome
metagenomic source
Peltula cylindrica
organism
A lichen is a symbiotic association of a fungus and a photosynthesizing partner, such as a green algae or cyanobacterium. The symbiosis is usually obligate for the fungus. The goal of this study was to generate genome information for phylogenetic analysis from the cultured mycobionts (lichenizing fungi) and lichen thalli spanning the diversity of lichenized groups in the classes Lecanoromycetes, Eurotiomycetes, Dothidiomycetes, Arthoniomycetes, and Lichinomycetes. Peltula cylindrica is a lichen composed of the lichenizing fungus Peltula cylindrica (for which the association is named) and its prokaryotic photobiont. The fungus Peltula cylindrica is in the class Lichinomycetes. The metagenome contains DNA from the mycobiont Peltula cylindrica, the cyanobacterial photobiont, and possibly endolichenic fungi and prokaryotes.
project name
SAMN02941903
sample derived from
Peltula cylindrica
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: public_SRR1531569_concoct_bin.26
title