2024-09-19
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21060717
SRA accession
spire_mag_01073005
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2011
collection date
92.12
%
completeness score
checkm2 0.1.3
completeness software
2.17
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic runs ERR1305912,ERR1305879 of study ERP014480.
description
stool
environmental medium
Denmark
geographic location (country and/or sea)
55.65
DD
geographic location (latitude)
12.47
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
Roux-en-Y gastric bypass (RYGB) is an effective means to achieve sustained weight loss for morbidly obese individuals. Besides rapid weight reduction, patients achieve major improvements of insulin sensitivity and glucose homeostasis. Dysbiosis of gut microbiota has been associated with obesity and some of its co-morbidities like type 2 diabetes, and major changes of gut bacterial communities have been hypothesized to mediate part of the beneficial metabolic effects observed after RYGB. This study we describe changes in gut microbial taxonomic composition and functional potential following RYGB.
project name
SAMEA3888902
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01073005
title