2024-09-19
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21060434
SRA accession
spire_mag_01022232
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2016-05-23
collection date
52.53
%
completeness score
checkm2 0.1.3
completeness software
0.17
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR7124824 of study SRP144673.
description
not specified
environmental medium
China
geographic location (country and/or sea)
39.97000000
DD
geographic location (latitude)
116.38000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
Gut microbiota drives an adverse metabolic landscape in end-stage renal disease
project name
SAMN08918138
sample derived from
Phocaeicola vulgatus
scientific_name
HiSeq X Ten
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01022232
title