2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21071977
SRA accession
spire_mag_01775090
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2016-12
collection date
94.3
%
completeness score
checkm2 0.1.3
completeness software
3.1
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR7124475 of study SRP144666.
description
stool
environmental medium
Hong Kong
geographic location (country and/or sea)
22.28300000
DD
geographic location (latitude)
114.13710000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
In this clinical study, we investigated the effect of high-intensity exercise intervention on glycaemic control in human and performed shotgun metagenomic sequencing to elucidate the role of human gut microbiota within such process.
project name
SAMN09042590
sample derived from
Bacteroides uniformis
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01775090
title