2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21067254
SRA accession
spire_mag_02301389
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2017-10-01
collection date
50.52
%
completeness score
checkm2 0.1.3
completeness software
2.01
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR17049007 of study SRP292589.
description
stool
environmental medium
South Africa
geographic location (country and/or sea)
-26.25000000
DD
geographic location (latitude)
27.85000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
Shotgun metagenomic sequencing of stool samples from two South African cohorts (rural Bushbuckridge, urban Soweto)
project name
SAMN16797099
sample derived from
Bacteroides uniformis
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_02301389
title