2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21064245
SRA accession
spire_mag_02362726
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2019
collection date
78.21
%
completeness score
checkm2 0.1.3
completeness software
2.49
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run ERR6170164 of study ERP130119.
description
stool
environmental medium
Netherlands
geographic location (country and/or sea)
52.13263300
DD
geographic location (latitude)
5.29126600
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
Fecal metagenomes were sequenced from individuals with different long term diet habits. The aim of the project is to identify if there are any differences in gut metagenome associated with different long term diet habits and gut resistome.
project name
SAMEA8945737
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_02362726
title