2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21064431
SRA accession
spire_mag_02500506
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
not provided
collection date
55.78
%
completeness score
checkm2 0.1.3
completeness software
2.93
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR16188915 of study SRP339901.
description
stool
environmental medium
USA
geographic location (country and/or sea)
40.76550000
DD
geographic location (latitude)
-73.95500000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
Fecal samples were collected from 20 patients diagnosed with active ulcerative colitis (UC, Mayo score >= 3 and an endoscopic subscore >= 1) before fecal microbiota transplantation (FMT) and at week 4 post-FMT. Samples from the 2-donor fecal preparation used to treat the 20 UC patients were also collected and subjected to metagenomic shotgun sequencing.
project name
SAMN22039250
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_02500506
title