2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21064739
SRA accession
spire_mag_02644067
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2016-08-09
collection date
99.85
%
completeness score
checkm2 0.1.3
completeness software
3.74
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR13712821 of study SRP306476.
description
stool
environmental medium
Canada
geographic location (country and/or sea)
51.04470000
DD
geographic location (latitude)
-114.07190000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
Stool sample metagenomes from two healthy FMT donors and ten FMT recipients (five recipients per donor). All recipients had chronic, recurrent Clostridium difficile infection (CDI) and received vancomycin for a minimum of ten days prior to FMT. Recipients did not take any antibiotics on the day of transplant, or for the remaining duration of the sampling period.
project name
SAMN17918426
sample derived from
Phocaeicola vulgatus
scientific_name
NextSeq 500
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_02644067
title