2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21067061
SRA accession
spire_mag_02352785
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2011-07
collection date
69.89
%
completeness score
checkm2 0.1.3
completeness software
4.62
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR11880840 of study SRP265342.
description
stool
environmental medium
Central African Republic
geographic location (country and/or sea)
6.61110000
DD
geographic location (latitude)
20.93940000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
Traditional human communities have shown more microbiome similarities with nonhuman primates in comparison to industrialized populations. In this study, we have profiled the fecal metagenomes of BaAka hunter-gatherers and Bantu agriculturalists from Central Africa and compared with the sympatric gorillas across seasons of variable dietary intake to understand this functional convergence.
project name
SAMN15047059
sample derived from
Bacteroides uniformis
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_02352785
title