2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21062989
SRA accession
spire_mag_01839603
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2015/2018
collection date
61.37
%
completeness score
checkm2 0.1.3
completeness software
4.27
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run ERR2849634 of study ERP111524.
description
stool
environmental medium
Canada
geographic location (country and/or sea)
44.63730000
DD
geographic location (latitude)
-63.58420000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
Numerous studies have linked shifts in the gut microbiome composition to infection events in various hematological malignances including acute lymphoblastic leukemia (ALL). In order to get a view of the gut microbiome of pediatriac ALL patients we completed both 16S rRNA gene sequencing and metagenomic shotgun sequencing from individuals with ALL being treated at the IWK. Metadata that goes along with these samples will be uploaded with the final publication of our findings on this cohort.
project name
SAMEA4982929
sample derived from
Phocaeicola vulgatus
scientific_name
NextSeq 550
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01839603
title