2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21063997
SRA accession
spire_mag_02271990
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2012-09-06
collection date
84.32
%
completeness score
checkm2 0.1.3
completeness software
2.25
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR13844421 of study SRP309077.
description
stool
environmental medium
USA
geographic location (country and/or sea)
39.29000000
DD
geographic location (latitude)
-76.61000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
The goal of this study is to characterize the fecal microbiome of healthy donors and recurrent C. difficile infection patients before and after receiving fecal microbiota transplant therapy. A central aim is to identify organisms at the strain level for better understanding of engraftment and for design of synthetic microbiota therapies that may one day replace FMT.
project name
SAMN18106057
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_02271990
title