2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21070059
SRA accession
spire_mag_00307562
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2013-05-23
collection date
80.53
%
completeness score
checkm2 0.1.3
completeness software
4.12
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run ERR636376 of study ERP007090.
description
stool
environmental medium
Sweden
geographic location (country and/or sea)
63.81857700
DD
geographic location (latitude)
20.29661100
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
We used untargeted metagenomic Illumina sequencing to study fecal samples of 35 Swedish healthcare students, taken before and after embarking on a student exchange program to the Indian peninsula or central Africa. The students were not taking antibiotics between sampling points. Antibiotic resistance gene frequencies were investigated in all samples.
project name
SAMEA2784475
sample derived from
Bacteroides uniformis
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_00307562
title