2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21065753
SRA accession
spire_mag_01880881
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2015-07-28
collection date
98.26
%
completeness score
checkm2 0.1.3
completeness software
0.72
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run ERR2676678 of study ERP108062.
description
not specified
environmental medium
Sweden
geographic location (country and/or sea)
59.35000000
DD
geographic location (latitude)
18.03000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
Impact of short- and long-term vegetarian diet on the gut microbiota and immune repertoire
project name
SAMEA4588093
sample derived from
Bacteroides uniformis
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01880881
title