2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21074650
SRA accession
spire_mag_02561479
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
missing: third party data
collection date
75.01
%
completeness score
checkm2 0.1.3
completeness software
2.91
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR8667783 of study SRP187482.
description
stool
environmental medium
not provided
geographic location (country and/or sea)
missing: third party data
DD
geographic location (latitude)
missing: third party data
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
Little is known regarding the changes in antimicrobial resistance (AMR) genes, pathogens, species and functional pathways that occur with fecal transplant, especially with an adult donor to child recipient. Fecal transplant for recurrent Clostridioides difficile infection (CDI) in children causes an overall significant sustained decrease in AMR genes and potential pathogens in addition to species level and functional changes. However certain AMR genes increased post-FMT and low levels of potential pathogens were found in donors.
project name
SAMN11053014
sample derived from
Bacteroides uniformis
scientific_name
Illumina HiSeq 3000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_02561479
title