2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21066989
SRA accession
spire_mag_02455595
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2016-02-01
collection date
79.0
%
completeness score
checkm2 0.1.3
completeness software
0.06
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR8550861 of study SRP184706.
description
stool
environmental medium
Zimbabwe
geographic location (country and/or sea)
-16.91458300
DD
geographic location (latitude)
31.44517000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
Fecal samples were obtained from 116 pre-school children in Zimbabwe, and the DNA content assessed using paired-end sequencing.
project name
SAMN10888509
sample derived from
Bacteroides uniformis
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_02455595
title