2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21062314
SRA accession
spire_mag_01540357
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2017-01-23
collection date
85.94
%
completeness score
checkm2 0.1.3
completeness software
4.12
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run ERR3015728 of study ERP112743.
description
stool
environmental medium
United Kingdom
geographic location (country and/or sea)
54.97825200
DD
geographic location (latitude)
-1.61778000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
Clinical patients with neurological disorders are known to have gastrointestinal symptoms. The study aims to investigate the efficacy of a low residue diet and investigate the role of the gut microbiome.
project name
SAMEA5192864
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01540357
title