2024-09-19
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21060375
SRA accession
spire_mag_01015545
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2014-01
collection date
51.35
%
completeness score
checkm2 0.1.3
completeness software
0.01
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run ERR985533 of study ERP011645.
description
stool
environmental medium
Germany
geographic location (country and/or sea)
48.53690000
DD
geographic location (latitude)
9.05360000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
Two healthy male volunteers (S1 and S2) were treated with ciprofloxacin for 6 days (500 mg orally twice daily). Stool samples from both participants were collected before treatment (baseline), on day 1, 3 and 6 of treatment as well as 2 and 28 days after treatment. Metagenomic shotgun sequencing was performed with all samples.
project name
SAMEA3506769
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01015545
title