2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21062807
SRA accession
spire_mag_01735984
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2011-03-22
collection date
91.02
%
completeness score
checkm2 0.1.3
completeness software
2.93
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run ERR1857028 of study ERP015847.
description
stool
environmental medium
Italy
geographic location (country and/or sea)
41.85846000
DD
geographic location (latitude)
12.62990000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
As worldwide metabolic disease pandemics rise relentlessly with their concomitant clinical complications such as non-alcoholic fatty liver disease (NAFLD), FLORINASH sought to use an innovative research concept to address the role of the intestinal microbiota in the pathogenesis of NAFLD. Metagenomic data deposited herein are from patients who underwent bariatric surgery, and for whom liver biopsies were available to allow diagnosis of NAFLD.
project name
SAMEA4019795
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01735984
title