2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21062754
SRA accession
spire_mag_01648503
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2017
collection date
95.63
%
completeness score
checkm2 0.1.3
completeness software
0.03
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR8926186 of study SRP192941.
description
stool
environmental medium
United Kingdom
geographic location (country and/or sea)
52.49000000
DD
geographic location (latitude)
-1.89000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
The microbial community in Intensive Care Unit patients plays a key role in determining the balance between health and disease. Here, we describe a prospective observational study of 25 ICU patients in which serial faecal samples were subjected to shotgun metagenome sequencing, phylogenetic profiling and microbial genome analyses.
project name
SAMN11258330
sample derived from
Phocaeicola vulgatus
scientific_name
NextSeq 550
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01648503
title