2024-09-19
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21061385
SRA accession
spire_mag_01283112
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2012
collection date
96.43
%
completeness score
checkm2 0.1.3
completeness software
7.89
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run ERR505094 of study ERP005558.
description
stool
environmental medium
Australia
geographic location (country and/or sea)
33.86000000
DD
geographic location (latitude)
151.21110000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
Two diets, Korean and Western diet. Each 6 individuals, half of which loose high weight and half of which loose little weight. Fecal samples taken before and after diet (3 months).
project name
SAMEA2452125
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina HiSeq 1000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01283112
title