2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21072653
SRA accession
spire_mag_01862652
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
missing: third party data
collection date
51.41
%
completeness score
checkm2 0.1.3
completeness software
1.58
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic runs SRR5903343,SRR5903363,SRR5903335 of study SRP114892.
description
stool
environmental medium
USA
geographic location (country and/or sea)
44.0234
DD
geographic location (latitude)
-92.46295
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
We sequenced the gut metagenomes of patients with colorectal cancer, together age- and sex-matched controls. Our goal is to analyze their taxonomic and functional profiles, as well as reconstruct bacterial and archaeal genomes of interest, related to the microbial metabolic toxicity that may be driving colorectal cancer progression.
project name
SAMN07452493
sample derived from
Bacteroides uniformis
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01862652
title