2024-09-19
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21061388
SRA accession
spire_mag_01284667
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2010
collection date
94.93
%
completeness score
checkm2 0.1.3
completeness software
0.98
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR7217510 of study SRP148966.
description
stool
environmental medium
USA
geographic location (country and/or sea)
38.62700000
DD
geographic location (latitude)
-90.19940000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
This is a short-read-sequence based longitudinal analysis of gut microbiome development in healthy twins 0-8 months of age in St Louis, Missouri.
project name
SAMN09259908
sample derived from
Phocaeicola vulgatus
scientific_name
NextSeq 500
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01284667
title