2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21065596
SRA accession
spire_mag_01613334
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
missing: third party data
collection date
83.05
%
completeness score
checkm2 0.1.3
completeness software
0.36
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run ERR247141 of study ERP002391.
description
not specified
environmental medium
not provided
geographic location (country and/or sea)
missing: third party data
DD
geographic location (latitude)
missing: third party data
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
This is a metagenomic study to investigate the microbial community and metabolic functions of Korean twin pairs. Fecal samples from 10 twin pairs were collected once and those of 8 pairs were collected twice with an average interval between sampling of about 2 years. Whole genome shotgun (WGS) sequencing was performed in a total of 36 fecal samples.
project name
SAMEA2017459
sample derived from
Bacteroides uniformis
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01613334
title