2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21067309
SRA accession
spire_mag_02517974
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2020
collection date
97.31
%
completeness score
checkm2 0.1.3
completeness software
0.86
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR13400322 of study SRP297708.
description
stool
environmental medium
Brazil
geographic location (country and/or sea)
-22.95270000
DD
geographic location (latitude)
-46.54418000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
Brazil is the fifth-largest country by area (3.2 million square miles) and represents 47% of the South American continent. It is also the sixth most populous country (210 million inhabitants), the first world's largest exporter of beef (2,314 million tonnes), poultry (3,811 million tonnes), and fourth-largest exporter of pork meat (861,000 tonnes), according to 2019 report(23), with Asian countries being the main importers (24). As part of a one-health based surveillance study, we characterized the fecal metagenomes of food-producing animals (swine, cattle, and poultry) and humans collected around the same timeframe from all five Brazilian geographic regions as well as the resistome encountered. To the best of our knowledge, this is the first study of this kind performed in South America.
project name
SAMN17278952
sample derived from
Bacteroides uniformis
scientific_name
NextSeq 500
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_02517974
title