2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21072472
SRA accession
spire_mag_00182118
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2018
collection date
81.65
%
completeness score
checkm2 0.1.3
completeness software
0.34
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR10084819 of study SRP221014.
description
stool
environmental medium
India
geographic location (country and/or sea)
21.14000000
DD
geographic location (latitude)
79.08000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
Collection of feacal samples collected from urban and rural Indian populations
project name
SAMN12711646
sample derived from
Bacteroides uniformis
scientific_name
Illumina HiSeq 3000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_00182118
title