2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21070461
SRA accession
spire_mag_00086243
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2016
collection date
81.81
%
completeness score
checkm2 0.1.3
completeness software
1.77
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run ERR1600553 of study ERP016884.
description
stool
environmental medium
China
geographic location (country and/or sea)
missing: third party data
DD
geographic location (latitude)
missing: third party data
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
T2D patients were randomly divided into two groups receiving WTP diet or usual care. The gut microbiota changed and the host clinical parameters were improved. Several key bacteria were identified.
project name
SAMEA4385411
sample derived from
Bacteroides uniformis
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_00086243
title