2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21071523
SRA accession
spire_mag_01172807
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2016-03-23
collection date
83.33
%
completeness score
checkm2 0.1.3
completeness software
0.1
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR5818506 of study SRP111623.
description
stool
environmental medium
China
geographic location (country and/or sea)
39.92000000
DD
geographic location (latitude)
116.42000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
The study is set to sequencing the feces from HIV-1 patients to find out the difference in the taxonomy and pathway
project name
SAMN07285636
sample derived from
Bacteroides uniformis
scientific_name
HiSeq X Ten
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01172807
title