2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21064182
SRA accession
spire_mag_02333830
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2017/2020
collection date
96.79
%
completeness score
checkm2 0.1.3
completeness software
3.36
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic runs SRR14874671,SRR14874762 of study SRP324954.
description
stool
environmental medium
USA
geographic location (country and/or sea)
42.39
DD
geographic location (latitude)
-71.12
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
Fecal microbiota transplant is a promising therapy for a variety of conditions, including ulcerative colitis where a third of recipients achieve clinical remission after treatment. Parameters maximizing the effectiveness of the therapy are not yet clear, and it is not known how important the transmission of donor microbes to recipients is. Here we have tested the effects of both antibiotic pretreatment and two modes of maintenance dose delivery, capsules versus enema, in a factorial design with 22 patients.
project name
SAMN19715496
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_02333830
title