2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21074910
SRA accession
spire_mag_02729191
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2019-04-05
collection date
69.55
%
completeness score
checkm2 0.1.3
completeness software
1.04
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR12137094 of study SRP269801.
description
stool
environmental medium
Italy
geographic location (country and/or sea)
41.93211900
DD
geographic location (latitude)
12.42859400
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
Metagenomes from patients participating in a randomised clinical trial receiving either FMT from donors or a placebo control.
project name
SAMN15428657
sample derived from
Bacteroides uniformis
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_02729191
title