2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21074224
SRA accession
spire_mag_02661283
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2010-12/2013-01
collection date
70.98
%
completeness score
checkm2 0.1.3
completeness software
0.08
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run ERR4290678 of study ERP122491.
description
stool
environmental medium
USA
geographic location (country and/or sea)
39.29000000
DD
geographic location (latitude)
-76.61000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
In order to improve the understanding of microbial dynamics during Fecal Microbiota Transplantation, engraftment and persistence rates of donor and patient bacteria were studied at the strain-level using whole-genome shotgun metagenomic sequencing data from stool donors, recipients and post-FMT patients.
project name
SAMEA7013956
sample derived from
Bacteroides uniformis
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_02661283
title