2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21071933
SRA accession
spire_mag_01925883
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2015-11-03
collection date
91.8
%
completeness score
checkm2 0.1.3
completeness software
6.86
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR6075175 of study SRP118860.
description
stool
environmental medium
China
geographic location (country and/or sea)
39.92000000
DD
geographic location (latitude)
116.42000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
we examined the composition and function of the gut microbiota from 75 patients with GDM and 70 healthy pregnant women in China, and further explore their possible associations with DM gut microbiome.
project name
SAMN07612783
sample derived from
Bacteroides uniformis
scientific_name
HiSeq X Ten
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01925883
title