2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21064631
SRA accession
spire_mag_02604348
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2016
collection date
82.42
%
completeness score
checkm2 0.1.3
completeness software
3.1
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run ERR11564287 of study ERP135981.
description
stool
environmental medium
Sweden
geographic location (country and/or sea)
59.85805600
DD
geographic location (latitude)
17.64472200
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
SCAPIS is a prospective population-based study of 30,154 men and women, aged 50–65 years, living in six municipality regions in Sweden. It was designed with the main aim to improve risk prediction and understanding of cardiovascular disease, chronic pulmonary obstructive disease, and related metabolic disorders. After a pilot study in 2012, recruitment was initiated in 2014 and completed in 2018. Individuals were randomly recruited from the population register, with a participation rate of 50%. Fecal samples were obtained for 9,819 participants at SCAPIS-Uppsala and SCAPIS-Malmo. More information can be found at: https://doi.org/10.1111/joim.12384 and https://doi.org/10.1038/s41467-022-33050-0
project name
SAMEA14101141
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_02604348
title