2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21067033
SRA accession
spire_mag_02761783
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2015-05
collection date
86.57
%
completeness score
checkm2 0.1.3
completeness software
1.79
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR10058657 of study SRP220263.
description
stool
environmental medium
Australia
geographic location (country and/or sea)
-32.93000000
DD
geographic location (latitude)
151.78000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
Study analysed metagenomes derived from fecal samples from 28 individuals with chronic obstructive pulmonary disease (COPD) and 29 healthy controls. Paired metabolomic data was also generated for the same samples.
project name
SAMN12649821
sample derived from
Bacteroides uniformis
scientific_name
NextSeq 500
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_02761783
title