2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21064043
SRA accession
spire_mag_02303491
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2018-09-22
collection date
95.0
%
completeness score
checkm2 0.1.3
completeness software
2.06
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR17048885 of study SRP292589.
description
stool
environmental medium
South Africa
geographic location (country and/or sea)
-24.82000000
DD
geographic location (latitude)
31.26000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Phocaeicola vulgatus
organism
Shotgun metagenomic sequencing of stool samples from two South African cohorts (rural Bushbuckridge, urban Soweto)
project name
SAMN16797058
sample derived from
Phocaeicola vulgatus
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_02303491
title