2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21072030
SRA accession
spire_mag_01869315
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2014
collection date
99.44
%
completeness score
checkm2 0.1.3
completeness software
1.2
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR7455942 of study SRP064159.
description
stool
environmental medium
USA
geographic location (country and/or sea)
43.67412500
DD
geographic location (latitude)
-72.27301300
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
Investigation of intestinal bacterial colonization in pre- and full-term infants and its connection to infection and allergy risk
project name
SAMN09515809
sample derived from
Bacteroides uniformis
scientific_name
Illumina MiSeq
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01869315
title