2024-09-20
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21071556
SRA accession
spire_mag_00828620
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
missing: third party data
collection date
86.46
%
completeness score
checkm2 0.1.3
completeness software
0.9
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR11414528 of study SRP199846.
description
stool
environmental medium
USA
geographic location (country and/or sea)
40.76410000
DD
geographic location (latitude)
-73.95680000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
This study investigated the role of Enterococcus in the outcome of allogeneic hematopoietic cell transplantation (allo-HCT). Enterococcus expansion is highly prevalent in allo-HCT patients, associated with graft-versus-host disease and mortality.
project name
SAMN07491238
sample derived from
Bacteroides uniformis
scientific_name
Illumina MiSeq
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_00828620
title