2024-09-21
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21081477
SRA accession
spire_mag_00911289
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
missing: third party data
collection date
90.91
%
completeness score
checkm2 0.1.3
completeness software
0.54
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic runs SRR1449682,SRR1491229,SRR1491512,SRR1491462,SRR1462648,SRR1490860,SRR1462652,SRR1491617,SRR1449456,SRR1491638,SRR1449501,SRR1449450,SRR1491090,SRR1490961,SRR1491757,SRR1449745,SRR1462501,SRR1462548,SRR1490899,SRR1462512,SRR1492019 of study SRP040146.
description
stool
environmental medium
USA
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
C.diff FMT
project name
SAMN02676126
sample derived from
Bacteroides uniformis
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_00911289
title