2024-09-21
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21079405
SRA accession
spire_mag_00346055
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2016-12-28
collection date
85.31
%
completeness score
checkm2 0.1.3
completeness software
0.46
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR5930519 of study SRP115355.
description
not provided
environmental medium
USA
geographic location (country and/or sea)
32.80940000
DD
geographic location (latitude)
-96.83650000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
Metagenomic shotgun sequencing identifies specific human gut microbes that are associated with immune checkpoint therapy efficacy in melanoma patients
project name
SAMN07498136
sample derived from
Bacteroides uniformis
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_00346055
title