2024-09-21
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21080665
SRA accession
spire_mag_01666456
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2014-06-06
collection date
95.15
%
completeness score
checkm2 0.1.3
completeness software
4.9
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR9095168 of study SRP198974.
description
stool
environmental medium
not provided
geographic location (country and/or sea)
missing: third party data
DD
geographic location (latitude)
missing: third party data
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
The stool microbiome samples of infants and mothers from an antibiotics treatment group and a control group were studied using metagenomic sequencing approach. The microbial diversity, taxonomy composition and antibiotics resistance genes were compared between the two groups and significantly differentially abundant species and genes were identified.
project name
SAMN11761769
sample derived from
Bacteroides uniformis
scientific_name
NextSeq 500
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01666456
title