2024-09-21
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21079862
SRA accession
spire_mag_01800701
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
not collected
collection date
61.75
%
completeness score
checkm2 0.1.3
completeness software
0.14
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR6030368 of study SRP117355.
description
not provided
environmental medium
not provided
geographic location (country and/or sea)
missing: third party data
DD
geographic location (latitude)
missing: third party data
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
Fecal microbial transplantation (FMT) is an effective treatment against Clostridium difficile (CDI) infections, but it is not known whether the route of delivery of FMT affects efficacy of treatment. In this study, FMT was delivered into CDI patients either by colonoscopy or by capsules. The same percentage of patients (96.2%) were cured in each of the treatments.
project name
SAMN07634999
sample derived from
Bacteroides uniformis
scientific_name
Illumina MiSeq
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01800701
title