2024-09-21
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21077238
SRA accession
spire_mag_01733797
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2012-02-14
collection date
84.48
%
completeness score
checkm2 0.1.3
completeness software
0.39
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run ERR1857068 of study ERP015847.
description
stool
environmental medium
Spain
geographic location (country and/or sea)
41.99474020
DD
geographic location (latitude)
2.81940530
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
As worldwide metabolic disease pandemics rise relentlessly with their concomitant clinical complications such as non-alcoholic fatty liver disease (NAFLD), FLORINASH sought to use an innovative research concept to address the role of the intestinal microbiota in the pathogenesis of NAFLD. Metagenomic data deposited herein are from patients who underwent bariatric surgery, and for whom liver biopsies were available to allow diagnosis of NAFLD.
project name
SAMEA4019835
sample derived from
Bacteroides uniformis
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01733797
title