2024-09-21
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21081381
SRA accession
spire_mag_00690053
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2014-05-15
collection date
73.49
%
completeness score
checkm2 0.1.3
completeness software
4.28
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic runs SRR3160453,SRR3160452 of study SRP069867.
description
not provided
environmental medium
USA
geographic location (country and/or sea)
32.8094
DD
geographic location (latitude)
-96.8365
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
This is a prospective cohort study using metagenomics to characterize gut microbiota populations of pediatric short bowel syndrome (SBS) patients with variable growth trajectories. Stool samples were collected from children with SBS and healthy controls over a three month period. Differences in gut bacterial populations were compared between healthy children and those with SBS (including a more in depth analysis of SBS children exhibiting poor and good growth).
project name
SAMN04480494
sample derived from
Bacteroides uniformis
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_00690053
title