2024-09-21
ENA first public
ERC000050
ENA-CHECKLIST
EMBL Heidelberg
INSDC center name
public
INSDC status
ERS21078800
SRA accession
spire_mag_01632660
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit 1.2.9
assembly software
default
binning parameters
metabat 2.12.1
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2014
collection date
75.81
%
completeness score
checkm2 0.1.3
completeness software
2.87
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR4052027 of study SRP082656.
description
stool
environmental medium
Italy
geographic location (country and/or sea)
46.06670000
DD
geographic location (latitude)
11.11670000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
human gut
local environmental context
human gut metagenome
metagenomic source
Bacteroides uniformis
organism
This is a pilot study whose aim is to assess the feasibility of strain-level tracking of microbiome members shared by mothers and their children.
project name
SAMN05615110
sample derived from
Bacteroides uniformis
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: spire_mag_01632660
title