2024-09-26
ENA first public
ERC000024
ENA-CHECKLIST
Ifremer
INSDC center name
public
INSDC status
ERS20924526
SRA accession
sam_P20EAA-BV054-20
Submitter Id
COX1
TARGETED_LOCI
ocean
broad-scale environmental context
SeBiMER
broker name
PDG-ODE-LITTORAL-LERN
collected_by
IFREMER
collecting institution
2020-11-16
collection date
PDG-ODE-LITTORAL-LERN
collector name
seawater metagenome
common name
not collected
m
depth
not provided
m
elevation
coastal sea water
environmental medium
water
environmental package
yes
environmental_sample
France
geographic location (country and/or sea)
49.3258
DD
geographic location (latitude)
-1.1127
DD
geographic location (longitude)
Baie des Veys
geographic location (region and locality)
metagenome
investigation type
coastal sea water
isolation_source
not provided
local environmental context
GTGTACAT
multiplex identifiers
seawater metagenome
organism
F: GGWACWGGWTGAACWGTWTAYCCYCC  /  R: TAIACYTCIGGRTGICCRAARAAYCA
pcr primers
ROME
project name
03.7
psu
salinity
11.4
psu
sample temperature
Sample 054 of coastal sea water from Baie des Veys collected in 2020, filtered on 20m filter. Sequenced for protist analysis purpose in run3.
sample_description
P20EAA-BV054-20
sample_name
seawater metagenome
scientific_name
Sequencing by synthesis (Illumina)
sequencing method
COX1
target gene
LEB_20EAA-BV054-20DNA
title