PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
1000-01-01
ENA first public
ERC000050
ENA-CHECKLIST
University of Derby
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS20853772
SRA accession
5dec95ef-cc79-4718-9832-ca293eda717f
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
Michael Sweet
collected_by
University of Derby
collecting institution
2023-10-18
collection date
68.52
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.26
%
contamination score
EVP10
culture_or_strain_id
adult coral tissue
environmental medium
United Kingdom
geographic location (country and/or sea)
not collected
DD
geographic location (latitude)
not collected
DD
geographic location (longitude)
University of Derby
geographic location (region and locality)
Aquarium
habitat
adult
host life stage
Eunicella verrucosa
host scientific name
not provided
host sex
396355
host taxid
Jamie Craggs
identified_by
Horniman Museum
identifier_affiliation
metagenome-assembled genome
investigation type
Coral: Eunicella verrucosa
isolation_source
marine benthic biome
local environmental context
coral metagenome
metagenomic source
101
number of standard tRNAs extracted
Vibrio splendidus
organism
WHOLE ORGANISM
organism part
ToL
project name
SAMEA115909923
sample derived from
Vibrio splendidus
scientific_name
Pacbio Sequel II
sequencing method
UDUK1666466
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
5dec95ef-cc79-4718-9832-ca293eda717f-asg-bin.31
title
jaEunVerr1.Vibrio_splendidus_1
tolid