2024-10-09
ENA first public
ERC000047
ENA-CHECKLIST
MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC center name
public
INSDC status
ERS21132542
SRA accession
FRAM_RAS_F4_05_1718_1-MAG_13
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
Flye v2.9.1
assembly software
Default settings
binning parameters
Metabat2 v2.15
binning software
marine pelagic biome [ENVO:01000023]
broad-scale environmental context
2018-05-12
collection date
90.79
%
completeness score
CheckM v1.2.0
completeness software
1.9
%
contamination score
25.39
m
depth
Metagenome-assembled genome generated from a water column sample collected in West Spitsbergen Current, Fram Strait - specifically derived from ERR12117681,ERS16474215
description
sea water [ENVO:00002149]
environmental medium
Svalbard
geographic location (country and/or sea)
79.01
DD
geographic location (latitude)
6.96
DD
geographic location (longitude)
seawater
isolation_source
marine photic zone [ENVO:00000209]
local environmental context
marine metagenome
metagenomic source
uncultured Flavobacteriaceae bacterium
organism
FRAM_RAS_WSC_F4_metagenomes
project name
ERR12117681,ERS16474215
sample derived from
uncultured Flavobacteriaceae bacterium
scientific_name
16S rRNA gene and multi-gene marker approach
taxonomic identity marker
Fram Strait/WSC water column MAG - FRAM_RAS_F4_05_1718_1-MAG_13
title