SAMN03835253
External Id
Chinese Academy of Agricultural Sciences
INSDC center name
2015-07-01T00:00:00Z
INSDC first public
2024-10-27T02:13:04.091Z
INSDC last update
live
INSDC status
Plant
NCBI submission model
Plant.1.0
NCBI submission package
ERS21173733
SRA accession
B73 etc.
cultivar
Full-length transcriptome assembly from 367 inbred lines RNA-seq data without reference genome were performed by Trinity and the assembled transcripts from each line were aligned to B73 5b pseudomolecules using GMAP to detect truly novel sequences and remove the ones that were alleles or paralogs with similar sequences in B73 reference genome. We clustered these remaining transcripts from all inbred lines and, for each unigene cluster, the longest one was selected as representative sequence. And that the representative sequence would then be remained if each cluster contained at least 19 inbred lines (5% of the panel). Finally, 2,355 novel sequences missing in B73 reference genome were obtained.
description
15DAP (Day After Pollination)
dev stage
China: JingZhou, Hubei Province
geo loc name
Zea mays subsp. mays
http://purl.obolibrary.org/obo/NCBITaxon_381124
organism
mays
http://purl.obolibrary.org/obo/NCBITaxon_4577
sub species
kenerl
tissue
Plant sample from Zea mays subsp. mays
title