SAMN03492648
External Id
Iowa State University
INSDC center name
2015-04-20T00:00:00Z
INSDC first public
2024-10-27T02:11:48.548Z
INSDC last update
live
INSDC status
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
ERS21173362
SRA accession
18-28 days
age
commercial crossbred
breed
Whole blood was globin depleted as described in Koltes et al., 2015 BMC Genomics (in final review). A single AB genotype animal for the SSC4 QTL for PRRS host response was selected and used for targeted de novo assembly of transcripts within the QTL region. We identified multiple transcripts in the SScrofa10.2 genome assembly that were incomplete or incorrectly assembled, leading to the assembly and submission of these transcripts within the Sus Scrofa chromosome 4 QTL region at 139-140Mb.
description
Sus scrofa domesticus
http://purl.obolibrary.org/obo/NCBITaxon_9825
organism
male
http://purl.obolibrary.org/obo/PATO_0000384
sex
domesticus
sub species
blood
http://purl.obolibrary.org/obo/UBERON_0000178
tissue
Sus scrofa globin-depleted blood de novo transcripts from chromosome 4 at 139-140Mb- targeted
title