2024-11-08
ENA first public
ERC000011
ENA-CHECKLIST
SAMEA114597062
External Id
UCSDMI
INSDC center name
2023-11-09T19:36:55Z
INSDC last update
public
INSDC status
ERS16774319
SRA accession
qiita_sid_15088:15088.HCU1955TGAP0034.R.meta
Submitter Id
10
abdominal_pain_vas
no
acute_fluid_collection
no
acute_necrotic_collection
not collected
alcohol_units
More than 1 week no antibiotics
antibiotic_treatment_before_enrollment
no
antidiabetics
1
atlanta
no
autism
1
bisap
no
bowel_intestinal_surgery_in_past
16
bun_mg_dl
8,9
ca_mg_dl
not collected
ca_mmol_l
no
cardiovascular_disease_in_past
no
cardiovascular_failure_grade_1
no
cardiovascular_failure_grade_2
no
cardiovascular_failure_grade_3
no
cardiovascular_failure_grade_4
HCU
center
no
cholestasis_at_time_of_enrollment
Never chronic alcohol consumption
chronic_alcohol_consumption
no
chronic_constipation_in_past
no
chronic_diarrhea_in_past
no
clostridioides_diff_infection_in_past
2021
collection date
eSwab
collection_device
rectal
collection_method
2021
collection_timestamp
not collected
comment1
The patient suffered from severe respiratiory disfunction due to X_Hystiocitosis and had entered a clinical trial 2 months ago with NINTEDANIB&#10;2 months ago she was put on LEVOFLOXACINO due to urinary infection
comment2
Altohugh the episode was atributted to biliary sludge NINTEDANIB was withdrawn
comment3
Glucosa levels on admission, without fasting
comment4
2
confusion_ad_admission
no
confusion_at_admission
Germany
country
0.65
crea_mg_dl
6
crp_mg_l
no
ct_or_sonographic_drainage
no
death
no
dementia_in_past
no
depression_in_past
P-MAPS
description
no
diabetes_mellitus_in_past
omnivour
diat
TRUE
dna_extracted
no
drainage_required
no
duodenal_obstruction
150
elevation
Host-associated
empo_1
Host-associated (non-saline)
empo_2
Animal (non-saline)
empo_3
Animal distal gut (non-saline)
empo_4
urban biome
env_biome
human-associated habitat
env_feature
intestine environment
env_material
human-gut
env_package
no
ercp_with_papillotomy
no
ercp_with_stent_implantation
no
ercp_yes
Caucasian
ethic
biliary
etiology
not collected
etiology_drugs
not collected
etiology_other
no
eus_drainage
no
eus_drainage_with_lams
no
eus_drainage_with_pigtails
no
extra_gastrointestinal_cancer_in_past
no
gastrointestinal_cancer_in_past
Germany:Gottingen
geo_loc_name
Germany
geographic location (country and/or sea)
136
glc_mg_dl
0
grade_of_stool
1
haps
no
heart_failure_in_past
no
hematologic_cancer_in_past
no
hematologic_failure
no
hepatic_failure
no
hepatitis_in_past
no
hiv
46
hkt
Homo sapiens
host scientific name
66
host_age
years
host_age_units
UBERON:gastrointestinal system
host_body_habitat
27.91111111
host_body_mass_index
UBERON:feces
host_body_product
UBERON:rectum
host_body_site
human
host_common_name
150
host_height
cm
host_height_units
827
host_subject_id
9606
host_taxid
62.8
host_weight
kg
host_weight_units
no
icu_admission
no
immunosuppressant
no
infected_collection
no
inflammatory_bowel_disease
no
insulin
no
invasive_ventilation
University medical center Goettingen
irb_institute
02807
irb_protocol_id
no
irritable_stomach_bowel_disease_in_past
no
kidney_injury_akin1
no
kidney_injury_akin2
no
kidney_injury_akin3
51.53
latitude
no
laxatives
377
ldh
3
length_of_hospital_stay
short
length_of_hospital_stay_binned
15
leuk_10_3_ml
not collected
life_stage
no
liver_cirrhosis_in_past
9.93
longitude
no
mestenterial_thrombosis
no
metformin
no
nafld
no
necrosis
no
neuroleptics
no
neurologic_failure
>10 cigarettes/day
nicotine_consumption
yes
no_complication
yes
no_food_intake_possible_for_24h
yes
no_previous_medication
no
non_invasive_ventilation
no
nsaid
not collected
number_of_opioid_application
not collected
opioid_dose
no
opioid_intake
not collected
opioid_name
human gut metagenome
organism
not collected
origin
no
other_abdominal_surgery
no
other_antidiabetics
no
other_gastrointestinal_diseases_in_past
no
other_neurological_disease
no
other_organ_failure
yes
paracetamol
no
parkinson_in_past
no
perotinitis
U Gottingen
physical_specimen_location
FALSE
physical_specimen_remaining
no
pleural_effusion
no
pm_none
yes
ppi
no
pseudocyst
rectal swab
qiita_sample_type
no
respiratory_failure_grade_1
no
respiratory_failure_grade_2
no
respiratory_failure_grade_3
no
respiratory_failure_grade_4
no
rheumatic_disease_in_past
rectal swab
sample_type
human gut metagenome
scientific_name
not collected
sequencing
mild
severity
male
sex
0
sirs
not collected
specific_current_antibiotics
not collected
specific_previous_week_antibiotics
no
statines
188
tag_mg_dl
<12h
time_pain_hosp
P-MAPS
title
15088.HCU1955TGAP0034.R.meta
title
TRUE
true_control
P-MAPS_HCU1955TGAP0034_R_meta
tube_id
no
walled_off_necrosis
2021
year