2024-11-08
ENA first public
ERC000011
ENA-CHECKLIST
SAMEA114596762
External Id
UCSDMI
INSDC center name
2023-11-09T18:58:59Z
INSDC last update
public
INSDC status
ERS16773761
SRA accession
qiita_sid_15088:15088.RIX1970SRAP020.B.16S
Submitter Id
10
abdominal_pain_vas
no
acute_fluid_collection
no
acute_necrotic_collection
not collected
alcohol_units
More than 1 month no antibiotics
antibiotic_treatment_before_enrollment
no
antidiabetics
1
atlanta
no
autism
0
bisap
no
bowel_intestinal_surgery_in_past
16.55
bun_mg_dl
not collected
ca_mg_dl
not collected
ca_mmol_l
no
cardiovascular_disease_in_past
no
cardiovascular_failure_grade_1
no
cardiovascular_failure_grade_2
no
cardiovascular_failure_grade_3
no
cardiovascular_failure_grade_4
RIX
center
no
cholestasis_at_time_of_enrollment
Never chronic alcohol consumption
chronic_alcohol_consumption
no
chronic_constipation_in_past
no
chronic_diarrhea_in_past
no
clostridioides_diff_infection_in_past
2021
collection date
eSwab
collection_device
buccal
collection_method
2021
collection_timestamp
not collected
comment1
not collected
comment2
not collected
comment3
On presentation patient also had diabetic ketoacidosis. ABG: pH - 7,04, pCO2 - 9mmHg, pO2 - 129 mmHg, lac - 0,8mmol/l, HCO3 - 2,4 mmol/l, BE -26 mmol/l.
comment4
2
confusion_ad_admission
no
confusion_at_admission
Germany
country
0.905
crea_mg_dl
not collected
crp_mg_l
no
ct_or_sonographic_drainage
no
death
no
dementia_in_past
no
depression_in_past
P-MAPS
description
yes
diabetes_mellitus_in_past
omnivour
diat
TRUE
dna_extracted
no
drainage_required
no
duodenal_obstruction
150
elevation
Host-associated
empo_1
Host-associated (non-saline)
empo_2
Animal (non-saline)
empo_3
Animal secretion (non-saline)
empo_4
urban biome
env_biome
human-associated habitat
env_feature
saliva
env_material
human-oral
env_package
no
ercp_with_papillotomy
no
ercp_with_stent_implantation
no
ercp_yes
Caucasian
ethic
hypertriglyceridemia
etiology
not collected
etiology_drugs
not collected
etiology_other
no
eus_drainage
no
eus_drainage_with_lams
no
eus_drainage_with_pigtails
no
extra_gastrointestinal_cancer_in_past
no
gastrointestinal_cancer_in_past
Germany:Gottingen
geo_loc_name
Germany
geographic location (country and/or sea)
245.072
glc_mg_dl
not collected
grade_of_stool
not collected
haps
no
heart_failure_in_past
no
hematologic_cancer_in_past
no
hematologic_failure
no
hepatic_failure
no
hepatitis_in_past
no
hiv
not collected
hkt
Homo sapiens
host scientific name
51
host_age
years
host_age_units
UBERON:oral cavity
host_body_habitat
24.54346238
host_body_mass_index
UBERON:saliva
host_body_product
UBERON:buccal mucosa
host_body_site
human
host_common_name
185
host_height
cm
host_height_units
850
host_subject_id
9606
host_taxid
84
host_weight
kg
host_weight_units
no
icu_admission
no
immunosuppressant
no
infected_collection
no
inflammatory_bowel_disease
no
insulin
no
invasive_ventilation
University medical center Goettingen
irb_institute
02807
irb_protocol_id
no
irritable_stomach_bowel_disease_in_past
no
kidney_injury_akin1
no
kidney_injury_akin2
no
kidney_injury_akin3
51.53
latitude
no
laxatives
not collected
ldh
6
length_of_hospital_stay
short
length_of_hospital_stay_binned
15.7
leuk_10_3_ml
not collected
life_stage
no
liver_cirrhosis_in_past
9.93
longitude
no
mestenterial_thrombosis
yes
metformin
no
nafld
no
necrosis
no
neuroleptics
no
neurologic_failure
>10 cigarettes/day
nicotine_consumption
yes
no_complication
yes
no_food_intake_possible_for_24h
no
no_previous_medication
no
non_invasive_ventilation
no
nsaid
not collected
number_of_opioid_application
not collected
opioid_dose
no
opioid_intake
not collected
opioid_name
human oral metagenome
organism
not collected
origin
yes
other_abdominal_surgery
yes
other_antidiabetics
no
other_gastrointestinal_diseases_in_past
no
other_neurological_disease
no
other_organ_failure
no
paracetamol
no
parkinson_in_past
no
perotinitis
U Gottingen
physical_specimen_location
FALSE
physical_specimen_remaining
no
pleural_effusion
no
pm_none
no
ppi
no
pseudocyst
buccal swab
qiita_sample_type
no
respiratory_failure_grade_1
no
respiratory_failure_grade_2
no
respiratory_failure_grade_3
no
respiratory_failure_grade_4
no
rheumatic_disease_in_past
buccal swab
sample_type
human oral metagenome
scientific_name
not collected
sequencing
mild
severity
male
sex
1
sirs
not collected
specific_current_antibiotics
not collected
specific_previous_week_antibiotics
no
statines
3166.53
tag_mg_dl
>24h<1week
time_pain_hosp
P-MAPS
title
15088.RIX1970SRAP020.B.16S
title
TRUE
true_control
P-MAPS_RIX1970SRAP020_B_16S
tube_id
no
walled_off_necrosis
2021
year