2024-11-11
ENA first public
ERC000021
ENA-CHECKLIST
UniBremen
INSDC center name
public
INSDC status
ERS22115629
SRA accession
25degrees.12C.Acetate.Fraction.Ultra-light
Submitter Id
shallow marine sediment [ENVO:03000034] | polar biom [ENVO:01000339] | glacial retreat [ENVO:01001656] | coast [ENVO:01000687]
broad-scale environmental context
acetate
chem_administration
2019-01-23
collection date
0 - 0.29
m
depth
Potter Cove sediment slurry SIP incubation with unlabeled acetate at 25 degree Celsius, density separated RNA Ultra-light fraction (= gradient position 5), sediment from station 13, core STA13.04, Potter Cove, Antarctica; parameters geographic location, depth and collection date  refer to sediment used to prepare the slurry; parameter original_fraction refers to pooled fraction numbers of total fractions, gradient_pos_density and gradient_pos_rel_amt refer to calculated average of pooled fractions; for more information about slurry sample refer to BioSample submitted under accession number given under source_mat_ID
description
-15
m
elevation
microbial community [PCO:1000004] | mesocosm [ENVO:01000620]
environmental medium
different substrate additions | RNA stable isotope probing | exposure temperature [EFO:0000718] | response to heat [GO:0009408] | labelling [EFO:0000562]
experimental factor
Antarctica
geographic location (country and/or sea)
-62.2253889
DD
geographic location (latitude)
-58.6411667
DD
geographic location (longitude)
King George Island/Isla 25 de Mayo, Potter Cove
geographic location (region and locality)
1.777
g/mL
gradient_pos_density
0.02455
gradient_pos_rel_amt
5
gradient_position
10.1007/978-1-4939-9721-3_15
internal_standard
13C
isotope
175
isotopolog
single
isotopolog_approach
0.011
isotopolog_atom_frac
1S/C2H4O2.Na/c1-2(3)4;/h1H3,(H,3,4);/q;+1/p-1/i1+1,2+1;
isotopolog_atom_pos
30.026
ppm
isotopolog_dose
T408:00
hour
isotopolog_incu_time
natural abundance
isotopolog_label
anaerobic sediment [ENVO:00002045]
local environmental context
marine sediment metagenome
organism
11+12/14
original_fraction
Bacterial 16S rRNA community in acetate degrading stable isotope probing slurry incubation experiment across temperature range with sediment of Potter Cove
project name
anaerobe
relationship to oxygen
marine sediment metagenome
scientific_name
10.1007/978-1-4939-9721-3_15
sip_method
tempSIP_36
source_mat_alias
ERS22115443
source_mat_id
Potter Cove sediment slurry SIP incubation - 12C Acetate at 25 degrees C - RNA Ultra-light fraction
title