2024-11-13
ENA first public
ERC000011
ENA-CHECKLIST
SAMEA113987003
External Id
Ifremer
INSDC center name
2023-07-05T11:06:08Z
INSDC last update
public
INSDC status
After total DNA extraction, performed using FastDNA Spin Kit for Soil , the seal faeces microbiota composition was determined by 16S metabarcoding
LIBRARY_CONSTRUCTION_PROTOCOL
ERS15970886
SRA accession
sam_FPh19
Submitter Id
16S rRNA
TARGETED_LOCI
SeBiMER
broker name
CEBC/Picardie Nature/PNM EPMO
collecting institution
2017-05-22
collection date
Yann Planque et al
collector name
feces metagenome
common name
littoral zone
environment (biome)
sand
environment (feature)
fecal material
environment (material)
none
environmental package
Yes
environmental_sample
France
geographic location (country and/or sea)
N 50 13' 17.04''
geographic location (latitude)
E 1 32' 19.679''
geographic location (longitude)
Baie de Somme (BDS)
geographic location (region and locality)
bacteria_archaea
investigation type
seal feces
isolation_source
TCATCA
multiplex identifiers
feces metagenome
organism
PCR1F_460 (5'-ACGGRAGGCAGCAG-3') and PCR1R_460 (5'-TACCAGGGTATCTAATCCT-3')
pcr primers
PHOBI
project name
seal feces
sample_description
FPh19
sample_name
feces metagenome
scientific_name
Sequencing by synthesis (Illumina)
sequencing method
16S rRNA
target gene
V3-V4
target subfragment
Seal feces 19
title