2024-11-13
ENA first public
ERC000011
ENA-CHECKLIST
SAMEA113982240
External Id
Ifremer
INSDC center name
2023-07-04T10:35:51Z
INSDC last update
public
INSDC status
After total DNA extraction, performed using FastDNA Spin Kit for Soil , the seal feces microbiota composition was determined by 16S metabarcoding
LIBRARY_CONSTRUCTION_PROTOCOL
ERS15965122
SRA accession
sam_FPh75
Submitter Id
16S rRNA
TARGETED_LOCI
SeBiMER
broker name
DTAM
collecting institution
2019-05-16
collection date
Daniel Koelsch
collector name
feces metagenome
common name
littoral zone
environment (biome)
sand
environment (feature)
fecal material
environment (material)
none
environmental package
Yes
environmental_sample
France
geographic location (country and/or sea)
N 46 59' 27.24''
geographic location (latitude)
O 56 18' 42.84''
geographic location (longitude)
Saint-Pierre et Miquelon (SPM; Le grand barachois, Miquelon)
geographic location (region and locality)
bacteria_archaea
investigation type
Seal feces
isolation_source
125
multiplex identifiers
feces metagenome
organism
PCR1F_460: 5'-ACGGRAGGCAGCAG-3'; PCR1R_460: 5'-TACCAGGGTATCTAATCCT-3'
pcr primers
PHOBI
project name
Seal feces
sample_description
FPh75
sample_name
feces metagenome
scientific_name
Sequencing by synthesis (Illumina)
sequencing method
16S rRNA
target gene
V3-V4
target subfragment
Seal feces 75
title