2024-11-18
ENA first public
ERC000047
ENA-CHECKLIST
SAMEA112147539
External Id
Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology
INSDC center name
2022-11-18T19:18:04Z
INSDC last update
public
INSDC status
ERS14257447
SRA accession
JR-MC-C-240519-109
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
MEGAHIT
assembly software
coverage and kmer
binning parameters
MetaBAT2
binning software
freshwater ecosystem
broad-scale environmental context
2019-05-24
collection date
58.56
%
completeness score
CheckM
completeness software
3.45
%
contamination score
JR-MC-C-240519-109: Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium
description
mesocosm
environmental medium
Czech Republic
geographic location (country and/or sea)
48.6189
DD
geographic location (latitude)
14.6731
DD
geographic location (longitude)
mesocosm experiment
isolation_source
mesocosm
local environmental context
aquatic metagenome
metagenomic source
Flavobacteriaceae bacterium
organism
PRJEB56877
project name
ERS14236930
sample derived from
Flavobacteriaceae bacterium
scientific_name
multi-marker approach
taxonomic identity marker
ERS14236930
title