2024-11-22
ENA first public
ERC000047
ENA-CHECKLIST
National Institute of Public Health and Environment (RIVM)
INSDC center name
public
INSDC status
ERS22144328
SRA accession
rickettsiella_Ird1
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
Flye v2.9.1-b1780 --meta --nano-raw --iterations 1, polypolish v0.5.0
assembly software
N/A
binning parameters
Tick holobiome metagenomic reads were filtered using genome GCF_001881495.1_ASM188149v1, mapped reads were then assembled
binning software
dune
broad-scale environmental context
2021-10-14
collection date
98.95
%
completeness score
CheckM2
completeness software
0.05
%
contamination score
Rickettsiella sp. isolated from Ixodes ricinus, Ird1 strain
description
Arthropoda
environmental medium
Netherlands
geographic location (country and/or sea)
52.303761
DD
geographic location (latitude)
4.53319
DD
geographic location (longitude)
Ixodes ricinus
isolation_source
coastal dune
local environmental context
tick metagenome
metagenomic source
Rickettsiella sp.
organism
PRJEB70514
project name
ERS17138673
sample derived from
Rickettsiella sp.
scientific_name
Whole genome
taxonomic identity marker
Rickettsiella str. Ird1 MAG
title