2024-11-22
ENA first public
ERC000047
ENA-CHECKLIST
National Institute of Public Health and Environment (RIVM)
INSDC center name
public
INSDC status
ERS22144329
SRA accession
rickettsiella_Ird6
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
Flye v2.9.1-b1780 --meta --nano-raw --iterations 1, polypolish v0.5.0
assembly software
N/A
binning parameters
Tick holobiome metagenomic reads were filtered using genome GCF_000257395.1_ASM25739v, mapped reads were then assembled
binning software
dune
broad-scale environmental context
2021-10-14
collection date
100
%
completeness score
CheckM2
completeness software
0.41
%
contamination score
Rickettsiella sp. Isolated from Ixodes ricinus, Ird6 strain
description
Arthropoda
environmental medium
Netherlands
geographic location (country and/or sea)
52.303761
DD
geographic location (latitude)
4.533193
DD
geographic location (longitude)
Ixodes ricinus
isolation_source
coastal dune
local environmental context
tick metagenome
metagenomic source
Rickettsiella sp.
organism
PRJEB70514
project name
ERS17138671
sample derived from
Rickettsiella sp.
scientific_name
Whole genome
taxonomic identity marker
Rickettsiella str. Ird6 MAG
title