2024-11-28
ENA first public
ERC000011
ENA-CHECKLIST
Ifremer
INSDC center name
public
INSDC status
ERS22465261
SRA accession
sam_oyster_group5
Submitter Id
9 months
age
SeBiMER
broker name
IFREMER, avenue du mus de Loup 17390 La tremblade, France
collecting institution
2021-02
collection date
Pacific oyster
common name
France
geographic location (country and/or sea)
not applicable
m
geographic location (depth)
not applicable
m
geographic location (elevation)
45.8
DD
geographic location (latitude)
-1.15
DD
geographic location (longitude)
Charente-Maritime La Tremblade
geographic location (region and locality)
Moribund oyster infected by OsHV-1
health or disease status of specific host
Crassostrea gigas and OsHV-1 virus
host scientific name
metagenome
investigation type
OsHV-1-infected naive oyster gills and mantle
isolation_source
Magallana gigas
organism
susceptible to OsHV-1 infection
phenotype
2023_WGS_oshv1_7_kits
project name
Infected oyster sampled at 48 hpi, DNA extracted with different kits (Promega, Monarch, Circulomics, Zymo, QiAgen, Macherey Nagel), sequenced multiple times (various runs). Original samples: sam_oyster2; sam_oyster4; sam_oyster3; sam_oyster9; sam_oyster11; sam_oyster15; sam_oyster19.
sample_description
oyster_group5
sample_name
Magallana gigas
scientific_name
Nanopore Sequencing
sequencing method
gills and mantle
tissue_type
infected oyster
title