2024-11-29
ENA first public
ERC000024
ENA-CHECKLIST
Scottish Microbiology Reference Laboratories
INSDC center name
public
INSDC status
ERS22138326
SRA accession
5_TE8
Submitter Id
0.057
L
amount or size of sample collected
ENVO:00000873
broad-scale environmental context
2017-01-23
collection date
0.1
m
depth
Pond water filtered through 0.4um polycarbonate membrane
description
ENVO:00002228
environmental medium
Bangladesh
geographic location (country and/or sea)
89.93
DD
geographic location (latitude)
24.9
DD
geographic location (longitude)
Jamalpur Sadar:Bamunpara
geographic location (region and locality)
ENVO:00000033
local environmental context
CTAB DNA extraction protocol, dx.doi.org/10.17504/protocols.io.bw8gphtw
nucleic acid extraction
aquaculture metagenome
organism
16S.515fB:GTGYCAGCMGCCGCGGTAA, 16S.806rB:GGACTACNVGGGTWTCTAAT, 18S.1391f:GTACACACCGCCCGTC, 18S.EukB:TGATCCTTCTGCAGGTTCACCTAC
pcr primers
Microbiomes of small-scale finfish aquaculture ponds in Bangladesh
project name
aquaculture metagenome
scientific_name
Illumina MiSeq
sequencing method
0.4
µm
size-fraction lower threshold
16S rRNA/18S rRNA
target gene
V4/V9
target subfragment
Bangladesh aquaculture pond water, Jan 2017 (winter 1), tilapia pond TE, sample 3
title