2024-11-29
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS22469282
SRA accession
SRR15342131_concoct_5
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
MetaSPAdes_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
poultry
broad-scale environmental context
EBI-EMG
broker name
2020-04-07
collection date
87.78
%
completeness score
CheckM2_v1.0.1
completeness software
3.2
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR15342131 of study SRP330911.
description
cecal material
environmental medium
USA
geographic location (country and/or sea)
39.71825000
DD
geographic location (latitude)
-85.62471000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
chicken gut metagenome
isolation_source
chicken
local environmental context
chicken gut metagenome
metagenomic source
uncultured Eisenbergiella sp.
organism
Microbiome profiling of broilers treated with different antimicrobial growth promoters (AGP) to guide the discovery of AGP alternatives.
project name
SAMN20522250
sample derived from
uncultured Eisenbergiella sp.
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR15342131_concoct_5
title