2024-11-29
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS22469737
SRA accession
SRR23946447_binner12_Refined_10
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
MetaSPAdes_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
poultry
broad-scale environmental context
EBI-EMG
broker name
2022-07-12
collection date
99.39
%
completeness score
CheckM2_v1.0.1
completeness software
0.3
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR23946447 of study SRP428893.
description
fecal material
environmental medium
Germany
geographic location (country and/or sea)
49.17000000
DD
geographic location (latitude)
6.53000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
chicken gut metagenome
isolation_source
chicken
local environmental context
chicken gut metagenome
metagenomic source
Ligilactobacillus agilis
organism
Metagenomic sequencing data describing the microbial composition of chicken feces. Chicken were split into three cohorts undergoing various interventions.
project name
SAMN33870108
sample derived from
Ligilactobacillus agilis
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR23946447_binner12_Refined_10
title