2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22359959
SRA accession
SRP216583_co1_137
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
terrestrial
broad-scale environmental context
not provided
collection date
96.57
%
completeness score
CheckM2;1.0.2;default
completeness software
0.88
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR9849936,SRR9849951 of study SRP216583.
description
terrestrial
environmental medium
Pacific Ocean
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
microbial mat metagenome
isolation_source
microbial mat biome
local environmental context
microbial mat metagenome
metagenomic source
uncultured Planctomycetaceae bacterium
organism
This BioProject includes 16S 5-pass filtered raw reads from the PacBio, raw metagenome reads, and raw metatranscriptome reads, all obtained from Fe mats at hydrothermal vents from Loihi Seamount (Hawaii), Urashima Vent Field (Southern Mariana Trough), and from Rainbow, TAG, and Snake Pit (Mid-Atlantic Ridge).
project name
SAMN12330916,SAMN12330923
sample derived from
uncultured Planctomycetaceae bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP216583_co1_137
title