2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22439030
SRA accession
binchicken_co42_38
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
CONCOCT;1.1.0;default
binning software
aquatic
broad-scale environmental context
2015-10-10
collection date
94.05
%
completeness score
CheckM2;1.0.2;default
completeness software
0.83
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5112540,SRR5112541 of study SRP095142.
description
aquatic
environmental medium
China
geographic location (country and/or sea)
37.31
DD
geographic location (latitude)
122.0
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine sediment metagenome
isolation_source
marine sediment biome
local environmental context
marine sediment metagenome
metagenomic source
uncultured bacterium
organism
HGD marine sediment metagenome raw sequence reads
project name
SAMN06140901,SAMN06140898
sample derived from
uncultured bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co42_38
title