2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22390429
SRA accession
binchicken_co100_462
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
terrestrial
broad-scale environmental context
2016-06-09
collection date
81.53
%
completeness score
CheckM2;1.0.2;default
completeness software
0.54
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR9705735,SRR9707989 of study SRP215242.
description
terrestrial
environmental medium
USA
geographic location (country and/or sea)
42.722
DD
geographic location (latitude)
-70.847
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
salt marsh metagenome
isolation_source
salt marsh biome
local environmental context
salt marsh metagenome
metagenomic source
Candidatus Woesearchaeota archaeon
organism
Salt marsh sediment microbial communities from the Plum Island Ecosystem Long term ecological research (LTER), Massachusetts, United States
project name
SAMN11532423,SAMN11530476
sample derived from
Candidatus Woesearchaeota archaeon
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co100_462
title