2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22354970
SRA accession
SRP296810_co1_125
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2018-08
collection date
64.01
%
completeness score
CheckM2;1.0.2;default
completeness software
1.74
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR13208889,SRR13208906 of study SRP296810.
description
aquatic
environmental medium
USA
geographic location (country and/or sea)
37.155718
DD
geographic location (latitude)
-80.470294
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
wastewater metagenome
isolation_source
wastewater biome
local environmental context
wastewater metagenome
metagenomic source
uncultured Candidatus Saccharibacteria bacterium
organism
A year-long study of a small wastewater treatment plant's treatment train in SW Virginia for the purpose of antibiotic resistance monitoring.
project name
SAMN17016682,SAMN17016685
sample derived from
uncultured Candidatus Saccharibacteria bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP296810_co1_125
title