2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22356357
SRA accession
SRP141376_co4_47
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
terrestrial
broad-scale environmental context
2012-03
collection date
96.55
%
completeness score
CheckM2;1.0.2;default
completeness software
2.17
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR7048224,SRR7048225 of study SRP141376.
description
terrestrial
environmental medium
Chile
geographic location (country and/or sea)
-21.268583
DD
geographic location (latitude)
-69.617974
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
microbial mat metagenome
isolation_source
microbial mat biome
local environmental context
microbial mat metagenome
metagenomic source
uncultured Myxococcales bacterium
organism
Four microbial mats located spatially close (few cm away) in a small shallow pond (LLA9) of the Salar de Llamara (Atacama Desert, Chile) along a strong vertical redox gradient, from oxic down to oxygen-deprived waters
project name
SAMN08688546,SAMN08688547
sample derived from
uncultured Myxococcales bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP141376_co4_47
title