2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22437929
SRA accession
binchicken_co405_335
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
91.19
%
completeness score
CheckM2;1.0.2;default
completeness software
0.16
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR2187629,SRR7428114,SRR7428117,SRR7428126,SRR8186049 of study SRP062869.
description
aquatic
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine sediment metagenome
isolation_source
marine sediment biome
local environmental context
marine sediment metagenome
metagenomic source
uncultured Candidatus Izemoplasmatales bacterium
organism
Methanogenic consortium capable of long-chain</p><p>paraffin degradation (SDB culture) enriched</p><p>from contaminated sediments of San Diego Bay,</p><p>California Degrades n-alkanes C25-C50
project name
SAMN04001714,SAMN04044562,SAMN04044562,SAMN04044567,SAMN10416050
sample derived from
uncultured Candidatus Izemoplasmatales bacterium
scientific_name
Illumina MiSeq,Illumina HiSeq 2500,Illumina HiSeq 2500,Illumina HiSeq 2500,Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co405_335
title