2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22442808
SRA accession
SRP061771_co1_10
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
MEGAHIT;1.2.9;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2010-08
collection date
84.23
%
completeness score
CheckM2;1.0.2;default
completeness software
5.06
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR2133563,SRR2133565 of study SRP061771.
description
aquatic
environmental medium
Pacific Ocean
geographic location (country and/or sea)
44.6695
DD
geographic location (latitude)
-125.0982
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine sediment metagenome
isolation_source
marine sediment biome
local environmental context
marine sediment metagenome
metagenomic source
uncultured Sulfurovum sp.
organism
Multiple metagenomes were sequenced from sediments collected from Hydrate Ridge methane seeps. These communities contain organisms performing the anaerobic oxidation of methane (AOM). Our goal was to analyzed the metabolic potential of these organisms and to correlate this genomic information with complementary transcriptomics and proteomics from the same communities #3730 refers to push core (PC) 16 collected during Alvin dive 4635 at Hydrate Ridge South (44° 34.20’ N, 125° 8.87’ W, 775 m depth) from a site of active methane seepage. #5133 refers to elevator 3A push core 47, collected at Hydrate Ridge North during Jason II dive J2-593 from an area of active seepage marked by bubble ebullition and surface expression of white microbial mat (44° 40.17’ N, 125° 5.89’ W, 600 m depth). #5133 contained 9 cm of sediment. #5579 refer to elevator 3A push core 41, collected at Hydrate Ridge North during Jason II dive J2-593 from an area of active seepage marked by bubble ebullition and surface expression of white microbial mat (44° 40.17’ N, 125° 5.89’ W, 600 m depth). #5579 contained 12 cm of sediment.
project name
SAMN03857202
sample derived from
uncultured Sulfurovum sp.
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP061771_co1_10
title