2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22372313
SRA accession
SRP344714_co2_21
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
terrestrial
broad-scale environmental context
2016
collection date
98.76
%
completeness score
CheckM2;1.0.2;default
completeness software
0.91
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR16798008,SRR16798009 of study SRP344714.
description
terrestrial
environmental medium
Spain
geographic location (country and/or sea)
43.03
DD
geographic location (latitude)
-8.08
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
metagenome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
uncultured Flavobacterium sp.
organism
Study using metataxonomic approaches to characterize both bacterial and fungal diversity as well as shotgun metagenomic sequencing for broad characterization of the vermicomposting microbiome
project name
SAMN22876309,SAMN22876308
sample derived from
uncultured Flavobacterium sp.
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP344714_co2_21
title