2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22443236
SRA accession
SRP069133_co1_461
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
host
broad-scale environmental context
2013-03-25
collection date
76.26
%
completeness score
CheckM2;1.0.2;default
completeness software
2.41
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR3139705,SRR3139708 of study SRP069133.
description
host
environmental medium
USA
geographic location (country and/or sea)
29.174
DD
geographic location (latitude)
-91.071
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
crustacean metagenome
isolation_source
crustacean biome
local environmental context
crustacean metagenome
metagenomic source
uncultured Candidatus Pelagibacter sp.
organism
This project looks at the microbiome associated with the copepod Eurytemora affinis and compares it to the surrounding water column.
project name
SAMN04421854,SAMN04421853
sample derived from
uncultured Candidatus Pelagibacter sp.
scientific_name
Illumina HiSeq 2000,Illumina MiSeq
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP069133_co1_461
title