2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22442602
SRA accession
ERP127260_co1_20
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
terrestrial
broad-scale environmental context
not provided
collection date
85.19
%
completeness score
CheckM2;1.0.2;default
completeness software
0.66
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR5414699,ERR5414701 of study ERP127260.
description
terrestrial
environmental medium
Spain
geographic location (country and/or sea)
39.32458333
DD
geographic location (latitude)
2.98869444
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
sediment metagenome
isolation_source
sediment biome
local environmental context
sediment metagenome
metagenomic source
Candidatus Hadarchaeota archaeon
organism
The present study investigates the microbial community structure and potential metabolisms in S’Avall hypersaline sediments. The S’Avall salterns, located in Mallorca (Balearic Islands), have saline concentrations close to saturation (about 37% w/v). Here, we have used shotgun metagenomics and 16S rRNA gene amplicon sequencing to study the community composition and changes along space and time, as well as to reveal the metabolic diversity of the Metagenome Assembled Genomes (MAGs), especially focusing on the methanogenic prokaryotes.
project name
SAMEA8196469,SAMEA8196470
sample derived from
Candidatus Hadarchaeota archaeon
scientific_name
Illumina MiSeq,Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: ERP127260_co1_20
title