2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22432497
SRA accession
binchicken_co219_219
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
MEGAHIT;1.2.9;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
63.56
%
completeness score
CheckM2;1.0.2;default
completeness software
1.38
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR2021503,SRR8542060 of study ERP021493.
description
aquatic
environmental medium
Pacific Ocean
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
hydrothermal vent metagenome
isolation_source
hydrothermal vent biome
local environmental context
hydrothermal vent metagenome
metagenomic source
uncultured Sulfurovum sp.
organism
This projects explores the functional diversity and activity of rocky subseafloor microbial communities in hydrothermal vent systems. Samples were collected in 2015 from three low temperature diffuse fluid vents at Axial seamount, located in the northeast Pacific Ocean. We also collected a background seawater sample away from the volcano caldera, at 1500m depth as well as within a hydrothermal plume above Anemone vent. Shotgun metagenomics and metatranscriptomics were performed on the three diffuse vent samples as well as the background and plume sample. This study helps to determine the genetic potential and expression patterns of the largely uncharacterized subseafloor microbial community and shows how these patterns change across the complicated biogeochemical gradients of hydrothermal vent systems.
project name
SAMEA101254168,SAMN10864365
sample derived from
uncultured Sulfurovum sp.
scientific_name
NextSeq 500,Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co219_219
title