2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22431558
SRA accession
binchicken_co17_198
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
terrestrial
broad-scale environmental context
2012-03
collection date
94.56
%
completeness score
CheckM2;1.0.2;default
completeness software
4.75
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR7048218,SRR7048226 of study SRP141376.
description
terrestrial
environmental medium
Chile
geographic location (country and/or sea)
-21.268583
DD
geographic location (latitude)
-69.617974
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
microbial mat metagenome
isolation_source
microbial mat biome
local environmental context
microbial mat metagenome
metagenomic source
uncultured archaeon
organism
Four microbial mats located spatially close (few cm away) in a small shallow pond (LLA9) of the Salar de Llamara (Atacama Desert, Chile) along a strong vertical redox gradient, from oxic down to oxygen-deprived waters
project name
SAMN08688553,SAMN08688548
sample derived from
uncultured archaeon
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co17_198
title