2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22440647
SRA accession
binchicken_co280_143
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
73.87
%
completeness score
CheckM2;1.0.2;default
completeness software
1.02
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR3212003,ERR4678565 of study ERP114226.
description
aquatic
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
wastewater metagenome
isolation_source
wastewater biome
local environmental context
wastewater metagenome
metagenomic source
uncultured Vitreoscilla sp.
organism
Based on 4 samples processed differently (Pig feces 1 & 2 (P1 & P2) Sewage 1 & 2 (S1 & S2)), storage conditions (Time 0h, 16h, 64h Temperature (-80C, -20C, 5C, 22C)), sequencing platform (FTX=Freeze thawing, HX=Nextflex Hiseq, LTSX=Kappa Hiseq, NX1NS=Nextera Nextseq, NX2NS=Nextera Nextseq, NFNS=Nextflex Nextseq). Sample names containing HHKTMBBXX are resequenced samples. Sample names containing MC are spiked with a mock community. Sample names containing EC, ECPBS and pureMC, are negative DNA extraction controls, negative controls containing PBS and postive controls of the mock community used to spike with, respectively. The a, b and c are indicators of replicate number.
project name
SAMEA5414648,SAMEA7426265
sample derived from
uncultured Vitreoscilla sp.
scientific_name
NextSeq 500,Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co280_143
title