2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22192518
SRA accession
SRP239243_co2_425
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
engineered
broad-scale environmental context
2017
collection date
96.23
%
completeness score
CheckM2;1.0.2;default
completeness software
1.34
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR10812145,SRR10812147 of study SRP239243.
description
engineered
environmental medium
Malaysia
geographic location (country and/or sea)
2.586126
DD
geographic location (latitude)
101.99483
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
metagenome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
uncultured Syntrophobacteraceae bacterium
organism
Metagenome sequencing of a Malaysian palm oil mill effluent (POME) anaerobic digester
project name
SAMN13706429,SAMN13706427
sample derived from
uncultured Syntrophobacteraceae bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP239243_co2_425
title