2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22443835
SRA accession
SRP090828_co4_175
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
aquatic
broad-scale environmental context
2012-07-11
collection date
98.82
%
completeness score
CheckM2;1.0.2;default
completeness software
0.02
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR4343442,SRR4343444 of study SRP090828.
description
aquatic
environmental medium
USA
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
lagoon metagenome
isolation_source
lagoon biome
local environmental context
lagoon metagenome
metagenomic source
uncultured Staphylococcaceae bacterium
organism
The purpose of this project was to determine the phylogenetic signature and biosynthetic potential of shallow agriculture-contaminated groundwater in California.
project name
SAMN05861672
sample derived from
uncultured Staphylococcaceae bacterium
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP090828_co4_175
title