2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22355869
SRA accession
SRP141132_co4_122
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
host
broad-scale environmental context
not provided
collection date
86.26
%
completeness score
CheckM2;1.0.2;default
completeness software
0.76
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR7039256,SRR7039257,SRR7039263 of study SRP141132.
description
host
environmental medium
Norway
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
gut metagenome
isolation_source
gut biome
local environmental context
gut metagenome
metagenomic source
uncultured Anaeroplasmataceae bacterium
organism
To characterize the microbiome in the ceca of wild and captive ptarmigans. The goal is to better understand the physiology of the microbial community in the ceca of these birds to obtain a broader understanding of their digestive physiologies. Samples were collected from the ceca of wild and captive ptarmigans to check for differences between their respective microbiota, and see how living conditions may affect the microbial communities.
project name
SAMN08954405,SAMN08954403,SAMN08954395
sample derived from
uncultured Anaeroplasmataceae bacterium
scientific_name
Illumina HiSeq 3000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP141132_co4_122
title