2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22458882
SRA accession
SRP128015_co1_242
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
99.98
%
completeness score
CheckM2;1.0.2;default
completeness software
2.36
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR6439370,SRR6439371 of study SRP128015.
description
aquatic
environmental medium
Pacific Ocean
geographic location (country and/or sea)
47.56
DD
geographic location (latitude)
-129.06
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
hydrothermal vent metagenome
isolation_source
hydrothermal vent biome
local environmental context
hydrothermal vent metagenome
metagenomic source
uncultured Desulfobacterales bacterium
organism
This study has a special attention to analyze the holistic functional structures and characteristics of microbiota directly associated with deep-sea hydrothermal vents in comparison with that in the global ocean water, using a metagenomic approach. In specific, the applicability of the microbial dispersal hypothesis – ‘Ocean Seed Bank’ or ‘Everything is everywhere’ to hydrothermal vent systems are evaluated in a functional aspect.
project name
SAMN08290444,SAMN08290443
sample derived from
uncultured Desulfobacterales bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP128015_co1_242
title