2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22431754
SRA accession
binchicken_co186_19
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2016-08-04
collection date
86.59
%
completeness score
CheckM2;1.0.2;default
completeness software
4.94
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8670877,SRR8670878,SRR8670879 of study SRP187592.
description
aquatic
environmental medium
Canada
geographic location (country and/or sea)
81.82452
DD
geographic location (latitude)
-70.71619
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
freshwater sediment metagenome
isolation_source
freshwater sediment biome
local environmental context
freshwater sediment metagenome
metagenomic source
uncultured Myxococcaceae bacterium
organism
The Arctic is currently experiencing climate-change related warming, which rapidly affects the environmental constraints on its microbial communities. Yet, our knowledge of the community structure and function of high Arctic freshwater microbes is still lacking, even though they play key roles in nutrient cycling. Here, using high-throughput sequencing, we show that sediment microbial communities in the High Arctic’s largest lake by volume, Lake Hazen, are highly diverse and contain novel organisms which genomes we could reconstruct.
project name
SAMN11056687
sample derived from
uncultured Myxococcaceae bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co186_19
title