2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22443768
SRA accession
SRP090399_co2_12
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2016-07-31
collection date
77.22
%
completeness score
CheckM2;1.0.2;default
completeness software
0.2
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR8816319 of study SRP090399.
description
aquatic
environmental medium
Puerto Rico
geographic location (country and/or sea)
17.00000000
DD
geographic location (latitude)
-67.00000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
metagenome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
uncultured archaeon
organism
Culture independent study of microbial communities in hypersaline environments in a tropical solar saltern in Cabo Rojo, Puerto Rico. This project aims to determine the diversity present using direct 16S rRNA amplification. A different diversity is expected due to the stable conditions year round which in turn may lead to identification of new species.
project name
SAMN11289320
sample derived from
uncultured archaeon
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP090399_co2_12
title