2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22439163
SRA accession
binchicken_co44_182
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
Rosella;0.4.2;default
binning software
engineered
broad-scale environmental context
not provided
collection date
99.88
%
completeness score
CheckM2;1.0.2;default
completeness software
0.13
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR4539292,ERR4549758 of study ERP123608.
description
engineered
environmental medium
not provided
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
metagenome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
uncultured Desulfuromonadaceae bacterium
organism
This study propose to elucidate community dynamic of previously observed growing granules in anaerobic digester. Communities of varied size granules are explored by the use of WGS as well as nanopore sequencing.
project name
SAMEA7233260,SAMEA7233243
sample derived from
uncultured Desulfuromonadaceae bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co44_182
title