2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22361325
SRA accession
ERP107066_co1_429
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
60.21
%
completeness score
CheckM2;1.0.2;default
completeness software
1.31
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR2345104,ERR2346693 of study ERP107066.
description
aquatic
environmental medium
Brazil
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
metagenome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
uncultured Actinomycetes bacterium
organism
Amazon river is an important freshwater basin. Known by its huge biodiversity, this water bodies possesses two marked seasons, flood and dry season. Here samples collected freshwater lakes samples during floods season belonging to Upper Amazon river basin (river course before Manaus city), filtered (< 5 um and > 0.2 um) and sequenced using Nextera XT libraries in a HiSeq 2500 Illumina Platform. These metagenomes reveal a great functional and taxonomic diversity and can lead to a better understanding about seasonal changes in this ecosystem.
project name
SAMEA104641231,SAMEA104641232
sample derived from
uncultured Actinomycetes bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: ERP107066_co1_429
title