2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22186251
SRA accession
ERP125879_co2_176
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
host
broad-scale environmental context
not provided
collection date
94.13
%
completeness score
CheckM2;1.0.2;default
completeness software
1.47
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR5004577,ERR5005190 of study ERP125879.
description
host
environmental medium
Ukraine
geographic location (country and/or sea)
51.212865
DD
geographic location (latitude)
30.192893
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
gut metagenome
isolation_source
gut biome
local environmental context
gut metagenome
metagenomic source
uncultured Lachnospiraceae bacterium
organism
The Earth Microbiome Project Multi-omics component (EMP500) involves amplicon and shotgun metagenomic sequencing and metabolomic profiling of over five hundred microbial communities from diverse environments on our planet. We developed new protocols for shotgun metagenomic sequencing and assembly, with the goal of applying this workflow to a range of environmental samples, combined with metabolomic profiling. 16S, 18S, and ITS amplicon sequencing was done in addition. We acquired a set of &gt 500 fresh environmental samples across a range of habitats, with the help of the EMP network of collaborators. A biobank of frozen aliquots for all samples is maintained at UCSD (soil samples stored at the Pacific Northwest National Laboratory) for future methods testing and analysis.
project name
SAMEA7724145
sample derived from
uncultured Lachnospiraceae bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: ERP125879_co2_176
title