2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22453531
SRA accession
binchicken_co195_221
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
61.74
%
completeness score
CheckM2;1.0.2;default
completeness software
0.16
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR599083,ERR599096 of study ERP001736.
description
aquatic
environmental medium
not provided
geographic location (country and/or sea)
-8.9729
DD
geographic location (latitude)
-139.2393
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine metagenome
isolation_source
marine biome
local environmental context
marine metagenome
metagenomic source
uncultured Gammaproteobacteria bacterium
organism
Seawater was filtered from different depths to retain small cell sizes (Bacteria Organisms). The DNA was extracted and submitted to high throughput sequencing.
project name
SAMEA2622673
sample derived from
uncultured Gammaproteobacteria bacterium
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co195_221
title