2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22192974
SRA accession
SRP257756_co1_123
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2017-02-15
collection date
96.45
%
completeness score
CheckM2;1.0.2;default
completeness software
0.73
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11582139,SRR11582140 of study SRP257756.
description
aquatic
environmental medium
Costa Rica
geographic location (country and/or sea)
9.901885
DD
geographic location (latitude)
-85.454327
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
subsurface metagenome
isolation_source
subsurface biome
local environmental context
subsurface metagenome
metagenomic source
uncultured Nitrospiraceae bacterium
organism
These are metagenomes from subsurface fluids collected from a >400 km section of the Costa Rica convergent margin spanning the Nicoya Peninsula to the volcanic arc in the Northern and Central volcanic regions.
project name
SAMN14653531,SAMN14653530
sample derived from
uncultured Nitrospiraceae bacterium
scientific_name
NextSeq 500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP257756_co1_123
title