2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22450761
SRA accession
binchicken_co150_257
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
terrestrial
broad-scale environmental context
2016-06-09
collection date
72.94
%
completeness score
CheckM2;1.0.2;default
completeness software
3.89
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR9700623,SRR9700626,SRR9705675 of study SRP215066.
description
terrestrial
environmental medium
USA
geographic location (country and/or sea)
42.722
DD
geographic location (latitude)
-70.847
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
salt marsh metagenome
isolation_source
salt marsh biome
local environmental context
salt marsh metagenome
metagenomic source
uncultured bacterium
organism
Salt marsh sediment microbial communities from the Plum Island Ecosystem Long term ecological research (LTER), Massachusetts, United States
project name
SAMN11530032,SAMN11530061,SAMN11532790
sample derived from
uncultured bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co150_257
title