2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22451571
SRA accession
binchicken_co328_152
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
78.97
%
completeness score
CheckM2;1.0.2;default
completeness software
0.73
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR10132665,SRR13076572,SRR13076583 of study SRP125492.
description
aquatic
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
freshwater metagenome
isolation_source
freshwater biome
local environmental context
freshwater metagenome
metagenomic source
uncultured Rheinheimera sp.
organism
To understand the microbial community composition and function in the natural aquatic ecosystems and the receving river of upgrading wastewater treatment plants
project name
SAMN12773016,SAMN16823271,SAMN16823270
sample derived from
uncultured Rheinheimera sp.
scientific_name
HiSeq X Ten,Illumina NovaSeq 6000,Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co328_152
title