2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22390267
SRA accession
ERP001736_co2_234
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
71.78
%
completeness score
CheckM2;1.0.2;default
completeness software
0.46
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR598975,ERR599111 of study ERP001736.
description
aquatic
environmental medium
not provided
geographic location (country and/or sea)
18.4417
DD
geographic location (latitude)
39.8567
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine metagenome
isolation_source
marine biome
local environmental context
marine metagenome
metagenomic source
uncultured Dehalococcoidaceae bacterium
organism
Seawater was filtered from different depths to retain small cell sizes (Bacteria Organisms). The DNA was extracted and submitted to high throughput sequencing.
project name
SAMEA2619907
sample derived from
uncultured Dehalococcoidaceae bacterium
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: ERP001736_co2_234
title