2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22459145
SRA accession
binchicken_co123_322
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
aquatic
broad-scale environmental context
2015-04-18
collection date
84.59
%
completeness score
CheckM2;1.0.2;default
completeness software
1.35
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR14000031,SRR14000032 of study SRP310192.
description
aquatic
environmental medium
Pacific Ocean
geographic location (country and/or sea)
23.957043
DD
geographic location (latitude)
-108.862273
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
hydrothermal vent metagenome
isolation_source
hydrothermal vent biome
local environmental context
hydrothermal vent metagenome
metagenomic source
uncultured Nitrososphaerota archaeon
organism
Auka hydrothermal vent field is located at 3650m depth in Pescadero Basin, at the mouth of the Gulf of California. Auka is a sediment hosted hydrothermal vent field, and shares many characteristics with the more well-studied vents at Guaymas Basin, 400 km to the northeast. Analysis of the sediment microbial community at Auka provides insight in the factors shaping microbial community structure at sediments hosted hydrothermal vents.
project name
SAMN18353079,SAMN18353078
sample derived from
uncultured Nitrososphaerota archaeon
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co123_322
title