2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22431791
SRA accession
binchicken_co188_202
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
aquatic
broad-scale environmental context
2018-03
collection date
61.93
%
completeness score
CheckM2;1.0.2;default
completeness software
1.34
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR10312492,SRR10312500 of study SRP226188.
description
aquatic
environmental medium
Pacific Ocean
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
hydrothermal vent metagenome
isolation_source
hydrothermal vent biome
local environmental context
hydrothermal vent metagenome
metagenomic source
uncultured Nitratifractor sp.
organism
Sequencing and assembly of metagenome-assembled genomes (MAGs) and sequencing of 16S rRNA gene amplicons from deep-sea hydrothermal vents at Brothers Volcano
project name
SAMN12239306,SAMN12239312
sample derived from
uncultured Nitratifractor sp.
scientific_name
Illumina HiSeq 3000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co188_202
title