2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22439655
SRA accession
binchicken_co50_378
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
terrestrial
broad-scale environmental context
2017-08-29
collection date
78.42
%
completeness score
CheckM2;1.0.2;default
completeness software
0.25
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8464962,SRR8465028 of study SRP180575.
description
terrestrial
environmental medium
USA
geographic location (country and/or sea)
47.6516
DD
geographic location (latitude)
-122.3045
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
rhizosphere metagenome
isolation_source
rhizosphere biome
local environmental context
rhizosphere metagenome
metagenomic source
uncultured Nitrosopumilaceae archaeon
organism
Rhizosphere microbial communities from Carex aquatilis grown in submerged peat from a thermokarst bog, University of Washington, Seatle, WA, United States
project name
SAMN10350570,SAMN10350767
sample derived from
uncultured Nitrosopumilaceae archaeon
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co50_378
title