2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22439220
SRA accession
binchicken_co46_113
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
99.78
%
completeness score
CheckM2;1.0.2;default
completeness software
9.82
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5007139,SRR5211068 of study SRP092902.
description
aquatic
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
subsurface metagenome
isolation_source
subsurface biome
local environmental context
subsurface metagenome
metagenomic source
uncultured Candidatus Midichloriaceae bacterium
organism
In the Mediterranean and other temperate waters, the stratification of the water column is a seasonal phenomenon that usually starts in April and ends in November. In this work, we have analyzed by high throughput metagenomics a fine profile of a stratified water column off the coast of Alicante, at 60 nautical miles, collected in October 2015. The bioproject contains several metagenomes and assembled genomes recovered from the same location but at different depths (15, 30, 45, 60, 75, 90, 1000 and 2000 m).
project name
SAMN05992384,SAMN06267294
sample derived from
uncultured Candidatus Midichloriaceae bacterium
scientific_name
Illumina HiSeq 4000,Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co46_113
title