2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22273630
SRA accession
SRP278252_co3_251
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
aquatic
broad-scale environmental context
2018
collection date
93.36
%
completeness score
CheckM2;1.0.2;default
completeness software
0.52
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12487002,SRR12487024 of study SRP278252.
description
aquatic
environmental medium
not provided
geographic location (country and/or sea)
37.141433
DD
geographic location (latitude)
127.6271
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
freshwater metagenome
isolation_source
freshwater biome
local environmental context
freshwater metagenome
metagenomic source
uncultured Chryseobacterium sp.
organism
Shotgun metagenomic data of Korean freshwater and wastewater from animal production facilities
project name
SAMN15860757,SAMN15860755
sample derived from
uncultured Chryseobacterium sp.
scientific_name
HiSeq X Ten
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP278252_co3_251
title