2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22437666
SRA accession
binchicken_co390_1
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
host
broad-scale environmental context
not provided
collection date
93.07
%
completeness score
CheckM2;1.0.2;default
completeness software
1.61
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR10746997,SRR13122251 of study SRP238373.
description
host
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
invertebrate metagenome
isolation_source
invertebrate biome
local environmental context
invertebrate metagenome
metagenomic source
uncultured Halothiobacillaceae bacterium
organism
stool metagenome of Halocynthia roretzi during starvation treatment
project name
SAMN13642135,SAMN16861209
sample derived from
uncultured Halothiobacillaceae bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co390_1
title