2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22390286
SRA accession
SRP092796_co1_752
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
MEGAHIT;1.2.9;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
88.07
%
completeness score
CheckM2;1.0.2;default
completeness software
3.69
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5002404,SRR9178439 of study SRP092796.
description
aquatic
environmental medium
Pacific Ocean
geographic location (country and/or sea)
22.75
DD
geographic location (latitude)
-158.0
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine plankton metagenome
isolation_source
marine plankton biome
local environmental context
marine plankton metagenome
metagenomic source
uncultured Gammaproteobacteria bacterium
organism
A time-resolved deep metagenomic survey of bacterioplankton from the ocean's surface to a depth of 1,000 m in the North Pacific Subtropical Gyre at Station ALOHA, collected from Hawaii Ocean Time-series (HOT) cruises from August 2010 through November 2017.
project name
SAMN05991682,SAMN11874522
sample derived from
uncultured Gammaproteobacteria bacterium
scientific_name
NextSeq 500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP092796_co1_752
title