2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22362675
SRA accession
SRP263991_co3_42
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2016-06-06
collection date
68.59
%
completeness score
CheckM2;1.0.2;default
completeness software
3.09
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11845624,SRR11845625 of study SRP263991.
description
aquatic
environmental medium
China
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
wastewater metagenome
isolation_source
wastewater biome
local environmental context
wastewater metagenome
metagenomic source
uncultured Gammaproteobacteria bacterium
organism
The composting samples were collected from a full-scale livestock manure (swine and poultry) aerobic composting over 171 day. The wastewater samples of aerobic digestion were collected from three full-scale anaerobic digestion units (buried biogas digester, up-flow anaerobic sludge blanket and film covered biogas digester)
project name
SAMN15014479,SAMN15014478
sample derived from
uncultured Gammaproteobacteria bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP263991_co3_42
title