2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22437508
SRA accession
binchicken_co387_121
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2014-08-20
collection date
61.12
%
completeness score
CheckM2;1.0.2;default
completeness software
0.95
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5435972,SRR6240745 of study SRP103583.
description
aquatic
environmental medium
USA
geographic location (country and/or sea)
38.9383
DD
geographic location (latitude)
-110.1342
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
groundwater metagenome
isolation_source
groundwater biome
local environmental context
groundwater metagenome
metagenomic source
Candidatus Woesearchaeota archaeon
organism
Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets: Groundwater sample from aquifer - Crystal Geyser CG08_land_8/20/14_0.20
project name
SAMN06264886,SAMN07960334
sample derived from
Candidatus Woesearchaeota archaeon
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co387_121
title