2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22442977
SRA accession
SRP065251_co1_50
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2011-08-18
collection date
93.64
%
completeness score
CheckM2;1.0.2;default
completeness software
4.26
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR2835677,SRR2835678 of study SRP065251.
description
aquatic
environmental medium
Australia
geographic location (country and/or sea)
-33.990892
DD
geographic location (latitude)
151.23212
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
algae metagenome
isolation_source
algae biome
local environmental context
algae metagenome
metagenomic source
uncultured Saprospiraceae bacterium
organism
Marine eukaryotes live in constant interaction with microorganisms that colonise their surfaces. The mechanisms that can drive the selection of those microbial communities are poorly understood. Metagenomes of microbial communities associated to the surfaces of different macroalgal and seagrass species, rocks and those present in the surrounding seawater were sequenced in order to compare their taxonomic composition and functionality using statistical analyses.
project name
SAMN04215149
sample derived from
uncultured Saprospiraceae bacterium
scientific_name
Illumina Genome Analyzer IIx
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP065251_co1_50
title