2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22442954
SRA accession
SRP063590_co1_80
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
terrestrial
broad-scale environmental context
2012-09
collection date
56.15
%
completeness score
CheckM2;1.0.2;default
completeness software
0.47
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR7428105,SRR7428122 of study SRP063590.
description
terrestrial
environmental medium
France
geographic location (country and/or sea)
43.484946
DD
geographic location (latitude)
5.188452
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
microbial mat metagenome
isolation_source
microbial mat biome
local environmental context
microbial mat metagenome
metagenomic source
uncultured Caulobacterales bacterium
organism
This project aimed to determine the impact of hydrocarbon contamination on the structure and activity of prokaryotic community in natural microbial mats.
project name
SAMN04044568
sample derived from
uncultured Caulobacterales bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP063590_co1_80
title