2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22357489
SRA accession
SRP173033_co3_55
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
engineered
broad-scale environmental context
not provided
collection date
66.24
%
completeness score
CheckM2;1.0.2;default
completeness software
1.3
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR14932511,SRR14932634 of study SRP173033.
description
engineered
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
activated sludge metagenome
isolation_source
activated sludge biome
local environmental context
activated sludge metagenome
metagenomic source
uncultured Gammaproteobacteria bacterium
organism
Global Water Microbiome Consortium (GWMC) conducted a global-scale investigation of microbiome in activated sludge since 2014, to understand biodiversity, biogeography, and underlying mechanisms of microbial communities in wastewater treatment plants (WWTPs) around the world. The activated sludge samples were collected from more than 260 WWTPs in 23 countries on 6 continents in 2014 and 2015.
project name
SAMN19518134,SAMN19518145
sample derived from
uncultured Gammaproteobacteria bacterium
scientific_name
Illumina HiSeq 3000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP173033_co3_55
title