2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22192866
SRA accession
SRP256446_co1_29
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
89.74
%
completeness score
CheckM2;1.0.2;default
completeness software
1.97
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11548471,SRR11548473 of study SRP256446.
description
aquatic
environmental medium
Finland
geographic location (country and/or sea)
61.14
DD
geographic location (latitude)
21.29
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
groundwater metagenome
isolation_source
groundwater biome
local environmental context
groundwater metagenome
metagenomic source
uncultured Gammaproteobacteria bacterium
organism
Metagenome sequencing to uncover extant metabolisms in the terrestrial deep subsurface (OL-KR13, Olkiluoto, Finland).
project name
SAMN14600459,SAMN14600457
sample derived from
uncultured Gammaproteobacteria bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP256446_co1_29
title