2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22433229
SRA accession
binchicken_co255_210
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
MEGAHIT;1.2.9;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
terrestrial
broad-scale environmental context
2016-06-20
collection date
78.95
%
completeness score
CheckM2;1.0.2;default
completeness software
0.3
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11848694,SRR12667042 of study SRP264768.
description
terrestrial
environmental medium
Switzerland
geographic location (country and/or sea)
47.1988
DD
geographic location (latitude)
8.2602
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
sediment metagenome
isolation_source
sediment biome
local environmental context
sediment metagenome
metagenomic source
uncultured Victivallales bacterium
organism
Sediment microbial communities from Lake Baldegg, Lucerne, Switzerland
project name
SAMN14511603,SAMN15739406
sample derived from
uncultured Victivallales bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co255_210
title