2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22432652
SRA accession
binchicken_co226_78
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
terrestrial
broad-scale environmental context
not provided
collection date
81.48
%
completeness score
CheckM2;1.0.2;default
completeness software
2.11
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12398058,SRR12623517 of study SRP276270.
description
terrestrial
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
cold seep metagenome
isolation_source
cold seep biome
local environmental context
cold seep metagenome
metagenomic source
uncultured Anaerolineales bacterium
organism
Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean
project name
SAMN14502500,SAMN13702308
sample derived from
uncultured Anaerolineales bacterium
scientific_name
NextSeq 500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co226_78
title