2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22357017
SRA accession
SRP163645_co1_46
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
MEGAHIT;1.2.9;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2016-08
collection date
61.65
%
completeness score
CheckM2;1.0.2;default
completeness software
2.06
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8157149,SRR8157150 of study SRP163645.
description
aquatic
environmental medium
Svalbard
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine sediment metagenome
isolation_source
marine sediment biome
local environmental context
marine sediment metagenome
metagenomic source
uncultured Victivallales bacterium
organism
16S rRNA amplicons were generated from two sites in Van Keulenfjorden, Svalbard in 2016.
project name
SAMN10372306,SAMN10372305
sample derived from
uncultured Victivallales bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP163645_co1_46
title