2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22452325
SRA accession
binchicken_co8_365
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
terrestrial
broad-scale environmental context
2013-12-02T15:00
collection date
98.44
%
completeness score
CheckM2;1.0.2;default
completeness software
0.73
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR1878617,ERR2407577 of study ERP021393.
description
terrestrial
environmental medium
Chile
geographic location (country and/or sea)
-23.730056
DD
geographic location (latitude)
-68.246861
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
microbial mat metagenome
isolation_source
microbial mat biome
local environmental context
microbial mat metagenome
metagenomic source
uncultured Leptolyngbya sp.
organism
High Andean Mountain lakes are a unique extreme environment all over the world since their locations are in high altitude saline deserts, largely influenced by volcanic activity. UV radiation, arsenic content, high salinity, and low dissolved oxygen content, together with extreme daily temperature fluctuations and oligotrophic conditions, shape up an environment that recreates the early earth and, even more, the extraterrestrial conditions. The discovery of living microbialites and microbial mats in 2009 has increased the interest in this area as an early earth counterpart. Since then, and up to now, we have started a prospection for this kind of environments in Argentina, Chile and Bolivia. In this study, we report our metagenomic WGS results from several of these unique environments
project name
SAMEA81453418
sample derived from
uncultured Leptolyngbya sp.
scientific_name
Illumina HiSeq 1500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co8_365
title