2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22364035
SRA accession
SRP302895_co1_331
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
85.21
%
completeness score
CheckM2;1.0.2;default
completeness software
1.61
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR13608702,SRR13608705 of study SRP302895.
description
aquatic
environmental medium
United Kingdom
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
metagenome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
uncultured Nannocystaceae bacterium
organism
Antimicrobial resistance (AMR) is a global health issue. The impact of sub-lethal concentrations of antibiotics on antimicrobial resistance gene (ARG) spread in the environment is still unclear. In this study we used semi-realistic flume systems to mimic the riverine environment and we monitored the effect of low concentration of sulfamethoxazole on the microbial community composition and function (i.e. ARG).
project name
SAMN17394051,SAMN17394049
sample derived from
uncultured Nannocystaceae bacterium
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP302895_co1_331
title