2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22358884
SRA accession
SRP193066_co1_98
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2015-11-01
collection date
94.33
%
completeness score
CheckM2;1.0.2;default
completeness software
2.19
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8931239,SRR8931241 of study SRP193066.
description
aquatic
environmental medium
USA
geographic location (country and/or sea)
43.0
DD
geographic location (latitude)
-92.5
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
groundwater metagenome
isolation_source
groundwater biome
local environmental context
groundwater metagenome
metagenomic source
uncultured Phycisphaeraceae bacterium
organism
Application of swine manure to agricultural land allows recycling of plant nutrients, but excess nitrate, phosphorus and fecal bacteria impact surface and drainage water quality. While agronomic and water quality impacts are well studied, little is known about the impact of swine manure slurry on soil microbial communities. We applied swine manure to intact soil columns collected from plots maintained under chisel plow or no-till with corn and soybean rotation
project name
SAMN11466642,SAMN11466644
sample derived from
uncultured Phycisphaeraceae bacterium
scientific_name
Illumina HiSeq 1500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP193066_co1_98
title