2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22431783
SRA accession
binchicken_co187_12
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
terrestrial
broad-scale environmental context
2013
collection date
82.96
%
completeness score
CheckM2;1.0.2;default
completeness software
1.46
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs DRR027590,DRR045396 of study DRP003377.
description
terrestrial
environmental medium
Madagascar
geographic location (country and/or sea)
-18.05
DD
geographic location (latitude)
47.03
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
fossil metagenome
isolation_source
fossil biome
local environmental context
fossil metagenome
metagenomic source
uncultured Nitrospiraceae bacterium
organism
The multiple nuclear genes as well as the complete mitochondrial genomes from two species of elephant birds were sequenced.
project name
SAMD00022953,SAMD00039860
sample derived from
uncultured Nitrospiraceae bacterium
scientific_name
Illumina MiSeq,Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co187_12
title