2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22443254
SRA accession
SRP072547_co1_174
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
terrestrial
broad-scale environmental context
2012-01
collection date
75.1
%
completeness score
CheckM2;1.0.2;default
completeness software
1.96
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR3310977,SRR3311162 of study SRP072547.
description
terrestrial
environmental medium
Mexico
geographic location (country and/or sea)
19.25
DD
geographic location (latitude)
-97.24
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
stromatolite metagenome
isolation_source
stromatolite biome
local environmental context
stromatolite metagenome
metagenomic source
uncultured Silicimonas sp.
organism
We performed a comparative metagenomic analysis of microbialite samples along a depth gradient to characterise the functional profile of the microbialite-associated microbial communities.
project name
SAMN04565676,SAMN04565677
sample derived from
uncultured Silicimonas sp.
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP072547_co1_174
title