2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22430430
SRA accession
ERP116193_co2_429
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
engineered
broad-scale environmental context
not provided
collection date
71.6
%
completeness score
CheckM2;1.0.2;default
completeness software
1.57
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR3428546,ERR3428547 of study ERP116193.
description
engineered
environmental medium
South Korea
geographic location (country and/or sea)
37.7
DD
geographic location (latitude)
126.4
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
metagenome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
uncultured Bdellovibrionales bacterium
organism
Shrimp aquaculture metagenome
project name
SAMEA5768042,SAMEA5768043
sample derived from
uncultured Bdellovibrionales bacterium
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: ERP116193_co2_429
title