2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22359953
SRA accession
SRP215229_co1_85
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
aquatic
broad-scale environmental context
2017
collection date
62.36
%
completeness score
CheckM2;1.0.2;default
completeness software
1.28
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR9705320,SRR9705321 of study SRP215229.
description
aquatic
environmental medium
Atlantic Ocean
geographic location (country and/or sea)
22.75
DD
geographic location (latitude)
-46.083
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
seawater metagenome
isolation_source
seawater biome
local environmental context
seawater metagenome
metagenomic source
uncultured Pseudohongiella sp.
organism
Mid-ocean ridge flanks are composed of geologically young (1-65 million year old) rock and make up 75% of the ocean floor. Ocean crustal fluid (water circulating through ocean crust) accounts for 1-2% of the total ocean volume, or about 1.35-27 million trillion liters of water. North Pond is an isolated sediment pond on the western flank of the Mid-Atlantic Ridge, underlain by basaltic rock and a cold, oxygenated aquifer that chemically resembles seawater. The microbial populations that inhabit this crustal fluid, however, are distinct from those in the ocean above. This project examines the taxonomy and genetic capability of the microbial communities inhabiting the crustal fluids beneath North Pond.
project name
SAMN12277442,SAMN12277464
sample derived from
uncultured Pseudohongiella sp.
scientific_name
NextSeq 500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP215229_co1_85
title