2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22361385
SRA accession
ERP107106_co2_119
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
host
broad-scale environmental context
not provided
collection date
89.18
%
completeness score
CheckM2;1.0.2;default
completeness software
0.6
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR3345696,ERR3345697 of study ERP107106.
description
host
environmental medium
not provided
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
gut metagenome
isolation_source
gut biome
local environmental context
gut metagenome
metagenomic source
uncultured Eubacteriales bacterium
organism
In collaboration with University of Ghana, Accra, Ghana and Makerere University, Kampala, Uganda, we have collected samples from community and privately used pit latrines. In parallel we have also collected samples from volunteers who use those pit latrines routinely to assess the following: if pit latrines offer such environment that will minimise pathogens if we see any clear correlation between pathogens identified in pit latrine and people using it if different depths of pit latrines offer different environment, resulting in different mocrobial composition For the first time this project will give us an idea on the gut microbial composition of a Ghanain and a Ugandan national. We will compare this to the gut microbiota information publically available from caucasian and Indian population. In addition, our project will also generate scientific data to advise the local public health agencies on the appropriate depth a pit latrine should have. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/
project name
SAMEA104717251,SAMEA104717250
sample derived from
uncultured Eubacteriales bacterium
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: ERP107106_co2_119
title