2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22354719
SRA accession
SRP293105_co2_6
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
MEGAHIT;1.2.9;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
host
broad-scale environmental context
2012-07-31
collection date
73.56
%
completeness score
CheckM2;1.0.2;default
completeness software
0.5
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR13081177,SRR13081185 of study SRP293105.
description
host
environmental medium
Albania
geographic location (country and/or sea)
42.045532
DD
geographic location (latitude)
19.489403
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
protist metagenome
isolation_source
protist biome
local environmental context
protist metagenome
metagenomic source
uncultured Planctomycetaceae bacterium
organism
We sequenced the genome and transcriptome of Pelomyxa schiedti, a free-living anaerobic amoeba of the Archamoebae group, and its symbionts. The main aim was to reconstruct the metabolism of its anaerobic mitochondrial-related organelle (MRO) and peroxisome, and to reveal metabolic connections between the amoeba and its endosymbionts.
project name
SAMN16578620
sample derived from
uncultured Planctomycetaceae bacterium
scientific_name
HiSeq X Ten
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP293105_co2_6
title