2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22365375
SRA accession
SRP329387_co2_207
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
aquatic
broad-scale environmental context
2018
collection date
67.36
%
completeness score
CheckM2;1.0.2;default
completeness software
2.56
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR15213103,SRR15213105 of study SRP329387.
description
aquatic
environmental medium
China
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
estuary metagenome
isolation_source
estuary biome
local environmental context
estuary metagenome
metagenomic source
uncultured Candidatus Pelagibacter sp.
organism
Marine group II euryarchaea (MGII) dominates the planktonic archaeal community in global surface seawater and is associated to particulate organic matters which mainly consist of polysaccharides. However, the polysaccharides metabolism of MGII euryarchaea is unclear. In this study, the distribution and potential for polysaccharides metabolism of MGII euryarchaea in estuarine area were investigated.
project name
SAMN20309215,SAMN20309213
sample derived from
uncultured Candidatus Pelagibacter sp.
scientific_name
HiSeq X Ten
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP329387_co2_207
title