2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22452604
SRA accession
binchicken_co124_364
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
terrestrial
broad-scale environmental context
not provided
collection date
94.19
%
completeness score
CheckM2;1.0.2;default
completeness software
0.41
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5215466,SRR8539650 of study SRP098469.
description
terrestrial
environmental medium
Indonesia
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
freshwater sediment metagenome
isolation_source
freshwater sediment biome
local environmental context
freshwater sediment metagenome
metagenomic source
uncultured Candidatus Bathyarchaeia archaeon
organism
Sequencing as part of the Microbial Dark Matter project phase II project
project name
SAMN06264372,SAMN10878144
sample derived from
uncultured Candidatus Bathyarchaeia archaeon
scientific_name
Illumina HiSeq 2500,Illumina MiSeq
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co124_364
title