2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22439929
SRA accession
binchicken_co197_129
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
engineered
broad-scale environmental context
not provided
collection date
67.84
%
completeness score
CheckM2;1.0.2;default
completeness software
1.05
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR3454363,SRR10035881 of study ERP116540.
description
engineered
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
activated sludge metagenome
isolation_source
activated sludge biome
local environmental context
activated sludge metagenome
metagenomic source
uncultured Thiobacillus sp.
organism
Wastewater treatment generate large amounts of waste activated sludge (WAS), which mainly consist of recalcitrant microbial cells and particulate organics. WAS pre-treatment is an effective way to destabilize sludge floc structure and release cellular macromolecules and other organic matter for improving digestion performance. Nonetheless, details in impact of WAS pre-treatment on digestion sludge microbiome remain elucidated.
project name
SAMEA5816319,SAMN12650276
sample derived from
uncultured Thiobacillus sp.
scientific_name
HiSeq X Ten,Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co197_129
title