2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22452656
SRA accession
binchicken_co117_121
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2019-09-10
collection date
96.03
%
completeness score
CheckM2;1.0.2;default
completeness software
1.0
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR15237810,SRR15237811 of study SRP329715.
description
aquatic
environmental medium
China
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
metagenome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
uncultured Bacteroidaceae bacterium
organism
Metagenomics analysis in the pesticide wastewater treatment plants
project name
SAMN20356008,SAMN20356007
sample derived from
uncultured Bacteroidaceae bacterium
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co117_121
title