2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22453525
SRA accession
SRP134809_co1_383
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
terrestrial
broad-scale environmental context
2014-07-16
collection date
64.8
%
completeness score
CheckM2;1.0.2;default
completeness software
2.36
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR6979426,SRR7152504 of study SRP139364.
description
terrestrial
environmental medium
USA
geographic location (country and/or sea)
31.972
DD
geographic location (latitude)
-81.028
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
salt marsh metagenome
isolation_source
salt marsh biome
local environmental context
salt marsh metagenome
metagenomic source
uncultured Flavobacteriaceae bacterium
organism
Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia
project name
SAMN08778809,SAMN09092245
sample derived from
uncultured Flavobacteriaceae bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP134809_co1_383
title