2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22356850
SRA accession
SRP155585_co2_39
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2010-03-01
collection date
81.78
%
completeness score
CheckM2;1.0.2;default
completeness software
2.08
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR7614707,SRR7614711 of study SRP155585.
description
aquatic
environmental medium
Antarctica
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine sediment metagenome
isolation_source
marine sediment biome
local environmental context
marine sediment metagenome
metagenomic source
uncultured Pseudomonadales bacterium
organism
Study's goal was to sequence metagenomes from marine sediments with varying proximity to the wastewater effluent source at Davis station (Antarctica) in addition to nearby marine animal feces. This data set has relevance for determining the impact that research station wastewater has upon nearby environmental microbial communities and the GIT of native wildlife species.
project name
SAMN09708231,SAMN09708227
sample derived from
uncultured Pseudomonadales bacterium
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP155585_co2_39
title