2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22442905
SRA accession
SRP062349_co6_4
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
90.92
%
completeness score
CheckM2;1.0.2;default
completeness software
3.04
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR2177362,SRR2177950,SRR5855234,SRR5855235 of study SRP062349.
description
aquatic
environmental medium
USA
geographic location (country and/or sea)
39.32
DD
geographic location (latitude)
-107.46
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
groundwater metagenome
isolation_source
groundwater biome
local environmental context
groundwater metagenome
metagenomic source
uncultured Acidimicrobiaceae bacterium
organism
The Genomes-to-Watershed Scientific Focus Area (SFA) 2.0 aims to develop a predictive</p><p>understanding of how climate or land-use induced changes can affect overall watershed</p><p>biogeochemical functioning. At the Rifle (CO) study site, this scope includes influx of dissolved</p><p>oxygen or nitrate into a perennially suboxic/anoxic aquifer containing a large reservoir of</p><p>reduced Fe- and S-containing compounds. The role of the "Metabolic Potential" component of</p><p>SFA 2.0 is to characterize prevalent metabolic pathways in subsurface microbes and to use these</p><p>data to inform the next generation of trait-based microbial models (GEWaSC).
project name
SAMN03983886,SAMN03983887,SAMN03983886,SAMN03983887
sample derived from
uncultured Acidimicrobiaceae bacterium
scientific_name
Illumina HiSeq 2000,Illumina HiSeq 2000,Illumina HiSeq 2500,Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP062349_co6_4
title