2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22364225
SRA accession
SRP313737_co1_122
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
host
broad-scale environmental context
2018-03
collection date
86.96
%
completeness score
CheckM2;1.0.2;default
completeness software
1.61
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR14160763,SRR14160765 of study SRP313737.
description
host
environmental medium
China
geographic location (country and/or sea)
32.62
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
gut metagenome
isolation_source
gut biome
local environmental context
gut metagenome
metagenomic source
uncultured Oscillospiraceae bacterium
organism
Nine fecal metagenomes of captive Rhinopithecus roxellana, 9 fecal metagenomes of wild Rhinopithecus roxellana, and 10 fecal metagenomes of Macaca mulatta. Our aim was to determine whether the gut microbiota provided any help for R. roxellana in the adaptation to a captive environment.
project name
SAMN18524293,SAMN18524291
sample derived from
uncultured Oscillospiraceae bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP313737_co1_122
title