2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22365049
SRA accession
SRP319275_co3_34
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2018-07-28
collection date
62.94
%
completeness score
CheckM2;1.0.2;default
completeness software
2.0
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR14492188,SRR14492199 of study SRP319275.
description
aquatic
environmental medium
China
geographic location (country and/or sea)
42.87
DD
geographic location (latitude)
89.05
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
aquatic metagenome
isolation_source
aquatic biome
local environmental context
aquatic metagenome
metagenomic source
uncultured Klebsiella sp.
organism
metagenomic sequencing data of water, sediment and soil samples from different salt lakes in China. If you have any questions about access to the private data or seeking for permission to your publication then the submitter is the person to contact to.
project name
SAMN19072997,SAMN19072996
sample derived from
uncultured Klebsiella sp.
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP319275_co3_34
title