2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22431929
SRA accession
binchicken_co198_20
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
engineered
broad-scale environmental context
2015-01-20
collection date
63.22
%
completeness score
CheckM2;1.0.2;default
completeness software
0.28
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5202689,SRR5202690 of study SRP097780.
description
engineered
environmental medium
United Kingdom
geographic location (country and/or sea)
54.5561
DD
geographic location (latitude)
-0.8216
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
salt mine metagenome
isolation_source
salt mine biome
local environmental context
salt mine metagenome
metagenomic source
uncultured Haloferacaceae archaeon
organism
We will address the question of how carbon is used in deep subsurface hypersaline microbial communities associated with deep Permian evaporate deposits. Our work involves examining brine seeps present in a UK salt mine (Boulby Mine). Here, we are able to utilize the vast area exposed by the mine roadway network (>1000km) to give us unprecedented access to the deep subsurface. Using this substantial area allows us not only to examine carbon usage in localized areas of the environment, but over extensive regions of the evaporite deposit. Consequently, this project provides a novel opportunity to ask questions about the biogeographical patterns present within a deep subsurface environment. Metagenomic sequencing is a vital to achieving these goals. The two key questions we aim to answer with this sequencing work are therefore:</p><p>What is the primary source of carbon for microbial communities living in a deep subsurface evaporite? and</p><p>Do the metabolic and carbon usage capabilities of these microbial communities vary spatially within a deep subsurface evaporite?
project name
SAMN06270278,SAMN06270277
sample derived from
uncultured Haloferacaceae archaeon
scientific_name
NextSeq 500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co198_20
title