2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22373028
SRA accession
binchicken_co131_293
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
MEGAHIT;1.2.9;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
terrestrial
broad-scale environmental context
2017-05-24
collection date
64.9
%
completeness score
CheckM2;1.0.2;default
completeness software
2.57
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR7094833,SRR8422664 of study SRP144376.
description
terrestrial
environmental medium
USA
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
soil metagenome
isolation_source
soil biome
local environmental context
soil metagenome
metagenomic source
uncultured Steroidobacteraceae bacterium
organism
Forest soil from Barre Woods Harvard Forest LTER site was incubated at 10C with heavy water. Sample is from a control plot at ambient soil temperature, organic horizon - top 4cm of soil
project name
SAMN08778041,SAMN09201898
sample derived from
uncultured Steroidobacteraceae bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co131_293
title