2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22432592
SRA accession
binchicken_co220_63
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2019-07
collection date
75.92
%
completeness score
CheckM2;1.0.2;default
completeness software
0.42
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR13007705,SRR13007709 of study SRP291609.
description
aquatic
environmental medium
not provided
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
aquatic metagenome
isolation_source
aquatic biome
local environmental context
aquatic metagenome
metagenomic source
uncultured Gammaproteobacteria bacterium
organism
Water-born microbiome
project name
SAMN16679550,SAMN16679546
sample derived from
uncultured Gammaproteobacteria bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co220_63
title