2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22431675
SRA accession
binchicken_co184_675
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
terrestrial
broad-scale environmental context
not provided
collection date
86.52
%
completeness score
CheckM2;1.0.2;default
completeness software
1.18
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR6823441,SRR7051285 of study SRP134683.
description
terrestrial
environmental medium
Mexico
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
hydrothermal vent metagenome
isolation_source
hydrothermal vent biome
local environmental context
hydrothermal vent metagenome
metagenomic source
uncultured Thermodesulfobacteriota bacterium
organism
Subseafloor sediment microbial communities from the background core at a depth of 12-15 cm, 2000m below sea level
project name
SAMN07632362,SAMN08779267
sample derived from
uncultured Thermodesulfobacteriota bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co184_675
title