2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22439873
SRA accession
SRP050083_co3_84
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2011-06
collection date
59.36
%
completeness score
CheckM2;1.0.2;default
completeness software
1.22
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR1658343,SRR1658462 of study SRP050083.
description
aquatic
environmental medium
USA
geographic location (country and/or sea)
39.5369
DD
geographic location (latitude)
-107.7828
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
groundwater metagenome
isolation_source
groundwater biome
local environmental context
groundwater metagenome
metagenomic source
uncultured Candidatus Saccharibacteria bacterium
organism
The study encompasses 12 microbial samples sourced from an aquifer adjacent to the Colorado River near the town of Rifle, CO, USA. Samples were taken at 6 different times prior to and during an acetate amendment experiment. For each sample, cells were collected on serial 0.2 and 0.1 μm filters resulting in a total of 12 different samples.
project name
SAMN03202994,SAMN03202996
sample derived from
uncultured Candidatus Saccharibacteria bacterium
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP050083_co3_84
title