2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22451777
SRA accession
binchicken_co363_14
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
host
broad-scale environmental context
2015-01-21
collection date
52.65
%
completeness score
CheckM2;1.0.2;default
completeness software
0.15
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5940699,SRR5940701 of study SRP107228.
description
host
environmental medium
Brazil
geographic location (country and/or sea)
-22.6813
DD
geographic location (latitude)
-46.9272
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
insect metagenome
isolation_source
insect biome
local environmental context
insect metagenome
metagenomic source
uncultured Prevotella sp.
organism
Blowflies and houseflies (Diptera) are mechanical vectors of pathogens that feed and breed in corpses, waste and decaying organic matter, where they also may acquire a significant part of their microbiome. Individual flies collected in urban, natural, and rural environments were sequenced using whole genome shotgun sequencing. Datasets were filtered to remove the fly host genome.
project name
SAMN07135659,SAMN07135661
sample derived from
uncultured Prevotella sp.
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co363_14
title