2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22354590
SRA accession
SRP291761_co1_32
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
engineered
broad-scale environmental context
2017-12
collection date
100
%
completeness score
CheckM2;1.0.2;default
completeness software
0.01
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12899023,SRR12899024 of study SRP291761.
description
engineered
environmental medium
Panama
geographic location (country and/or sea)
8.983333
DD
geographic location (latitude)
-79.51667
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
plastic metagenome
isolation_source
plastic biome
local environmental context
plastic metagenome
metagenomic source
uncultured Coxiellaceae bacterium
organism
Shotgun metagenomic and bioinformatic tools were applied for genome assembly and annotation of twelve different bacterial genomes from microbiome biofouled fabric materials contain plasticizers. These genomes harbor genes involved in hydrocarbon and fabric biodegradation providing useful information for developing antimicrobial additives.
project name
SAMN16111857,SAMN16111753
sample derived from
uncultured Coxiellaceae bacterium
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP291761_co1_32
title