2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22440568
SRA accession
binchicken_co255_229
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
MEGAHIT;1.2.9;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
terrestrial
broad-scale environmental context
2016-06-20
collection date
92.02
%
completeness score
CheckM2;1.0.2;default
completeness software
3.41
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11848694,SRR12667042 of study SRP264768.
description
terrestrial
environmental medium
Switzerland
geographic location (country and/or sea)
47.1988
DD
geographic location (latitude)
8.2602
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
sediment metagenome
isolation_source
sediment biome
local environmental context
sediment metagenome
metagenomic source
uncultured bacterium
organism
Sediment microbial communities from Lake Baldegg, Lucerne, Switzerland
project name
SAMN14511603,SAMN15739406
sample derived from
uncultured bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co255_229
title