2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22458353
SRA accession
binchicken_co61_54
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2013-09-24
collection date
53.65
%
completeness score
CheckM2;1.0.2;default
completeness software
0.07
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs DRR226086,DRR226089 of study DRP007950.
description
aquatic
environmental medium
Pacific Ocean
geographic location (country and/or sea)
1.2506
DD
geographic location (latitude)
163.2478
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine sediment metagenome
isolation_source
marine sediment biome
local environmental context
marine sediment metagenome
metagenomic source
uncultured Chitinophagales bacterium
organism
Amplicon and metagenomic analysis was conducted to investigate the microbial ecosystems in deep marine sediments of Equotrial and North Pacific Ocean
project name
SAMD00223713
sample derived from
uncultured Chitinophagales bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co61_54
title