2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22273935
SRA accession
SRP284430_co1_28
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
terrestrial
broad-scale environmental context
2019-06
collection date
67.41
%
completeness score
CheckM2;1.0.2;default
completeness software
0.84
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12687281,SRR12687321 of study SRP284430.
description
terrestrial
environmental medium
China
geographic location (country and/or sea)
44.38
DD
geographic location (latitude)
83.33
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
soil metagenome
isolation_source
soil biome
local environmental context
soil metagenome
metagenomic source
uncultured Dehalococcoidales bacterium
organism
Metagenomic sequencing was performed to analyze the rhizosphere and bulk soils of three halophytic plants in three sample plots
project name
SAMN16205486,SAMN16205487
sample derived from
uncultured Dehalococcoidales bacterium
scientific_name
Illumina HiSeq 1500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP284430_co1_28
title