2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22365578
SRA accession
SRP330255_co2_184
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
MEGAHIT;1.2.9;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
host
broad-scale environmental context
2016-08
collection date
85.57
%
completeness score
CheckM2;1.0.2;default
completeness software
2.74
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR15283116,SRR15283141 of study SRP330255.
description
host
environmental medium
China
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
gut metagenome
isolation_source
gut biome
local environmental context
gut metagenome
metagenomic source
uncultured Alistipes sp.
organism
When choosing suitable techniques for different application scenarios, more detailed metrics are needed to consider, e.g., specificity, sensitivity, repeatability, evenness, depth, etc. Here, we compared 8 metrics of Sequence-independent single-primer amplification and Multiple displacement amplification, as well as two emerged Meta-transcriptomics and Metagenomic , using marmot rectal samples spiked with different concentrations of 5 viruses. Results provide more information about the performance of these methods and help us to understand their suitability for different applications.
project name
SAMN20448104,SAMN20448044
sample derived from
uncultured Alistipes sp.
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP330255_co2_184
title