2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22457563
SRA accession
SRP119689_co1_287
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
terrestrial
broad-scale environmental context
2015-07-21
collection date
74.31
%
completeness score
CheckM2;1.0.2;default
completeness software
0.23
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR6155503,SRR6155509 of study SRP119689.
description
terrestrial
environmental medium
USA
geographic location (country and/or sea)
47.17
DD
geographic location (latitude)
-89.66
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
sediment metagenome
isolation_source
sediment biome
local environmental context
sediment metagenome
metagenomic source
uncultured bacterium
organism
Shotgun metagenome sequence reads from a single sediment core collected from Lake Superior.
project name
SAMN07759013,SAMN07759014
sample derived from
uncultured bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP119689_co1_287
title