2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22432841
SRA accession
binchicken_co233_50
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
aquatic
broad-scale environmental context
2002
collection date
76.83
%
completeness score
CheckM2;1.0.2;default
completeness software
3.05
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5716309,SRR5716310 of study SRP109823.
description
aquatic
environmental medium
Pacific Ocean
geographic location (country and/or sea)
44.586
DD
geographic location (latitude)
-125.12
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
subsurface metagenome
isolation_source
subsurface biome
local environmental context
subsurface metagenome
metagenomic source
uncultured Rikenellaceae bacterium
organism
Methane is a critical component of the deep subsurface. In shallow marine sediments, anaerobic oxidation of methane (AOM) is coupled to sulfate reduction. However, relatively little is known about which microbial metabolisms are active in deeply buried sediment containing methane hydrates, particularly with regard to alternative electron acceptors that could fuel deep AOM. We propose to determine which microbial population(s) and functional genes are active in the deep biosphere beneath Hydrate Ridge offshore Oregon by sequencing metagenomes and 16S amplicons from samples drilled on ODP Leg 204 and archived for future molecular analysis. We will analyze gene diversity and expression in six geochemically distinct zones from 2 to 139 meters below the seafloor with the goal of evaluating the relationship between geochemical conditions (i.e. sulfate, iron and manganese availability) and microbial metabolic activity.
project name
SAMN07256346
sample derived from
uncultured Rikenellaceae bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co233_50
title