2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22458409
SRA accession
binchicken_co96_64
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
aquatic
broad-scale environmental context
2004-08
collection date
94.6
%
completeness score
CheckM2;1.0.2;default
completeness software
0.6
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR6344961,SRR6344962 of study SRP126093.
description
aquatic
environmental medium
Russia
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
hot springs metagenome
isolation_source
hot springs biome
local environmental context
hot springs metagenome
metagenomic source
uncultured Chloroflexus sp.
organism
In this study we focus on two hydrothermal pools, Arkashin Shurf and Zavarzin Spring, in Uzon Caldera, Kamchatka, Russia that were previously characterized using 16S ribosomal RNA sequencing and geochemical analysis undertaken in Burgess et al. 2012 (DOI: 10.1007/s00248-011-9979-4). First we produced metagenomic assembled genomes (MAGs) and then we characterized and compared them between the two pools. Hypotheses: (1) Discussion of MAG’s and possible functions novelty? (2) Comparison of Burgess 16S to metagenomes (3) Differences in functions between pools based on geochemistry.
project name
SAMN08105301,SAMN08105287
sample derived from
uncultured Chloroflexus sp.
scientific_name
Illumina MiSeq
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co96_64
title