2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22354367
SRA accession
SRP287540_co1_173
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
host
broad-scale environmental context
not provided
collection date
92.66
%
completeness score
CheckM2;1.0.2;default
completeness software
2.1
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12833151,SRR12833155 of study SRP287540.
description
host
environmental medium
not provided
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
rat gut metagenome
isolation_source
rat gut biome
local environmental context
rat gut metagenome
metagenomic source
uncultured Dorea sp.
organism
To reveal the taxonomic and functional changes of gut content during intestinal ischemia and reperfusion in rats
project name
SAMN16457438,SAMN16457434
sample derived from
uncultured Dorea sp.
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP287540_co1_173
title