2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22365356
SRA accession
SRP324684_co1_4
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
host
broad-scale environmental context
2020-11-02
collection date
93.18
%
completeness score
CheckM2;1.0.2;default
completeness software
4.81
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR15291763,SRR15291766 of study SRP324684.
description
host
environmental medium
Malaysia
geographic location (country and/or sea)
5.3398
DD
geographic location (latitude)
100.2818
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
gut metagenome
isolation_source
gut biome
local environmental context
gut metagenome
metagenomic source
uncultured Paeniclostridium sp.
organism
Microbiota inhabiting the animal digestive systems contribute to the host metabolic capacity. To date, information on crustacean gut microbiota function is scarce. 16S rRNA amplicon and shotgun metagenomic sequencing were performed to study the taxonomy and function of orange mud crab gut microbiota.
project name
SAMN19689471,SAMN19689470
sample derived from
uncultured Paeniclostridium sp.
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP324684_co1_4
title