2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22430274
SRA accession
ERP110561_co1_79
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
host
broad-scale environmental context
2015-11-20
collection date
97.63
%
completeness score
CheckM2;1.0.2;default
completeness software
1.01
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR3265217,ERR3265218 of study ERP110561.
description
host
environmental medium
USA
geographic location (country and/or sea)
26.0112
DD
geographic location (latitude)
-80.1495
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
sponge metagenome
isolation_source
sponge biome
local environmental context
sponge metagenome
metagenomic source
uncultured Gemmatimonadaceae bacterium
organism
Cinachyrella keukenthali is quickly emerging as a model sponge. Its small size makes it ideal for laboratory sized aquaria and long-term experiments. It is also on the Global Invertebrate Genome Alliance’s priority list for genome sequencing. Other experiments have also included a focused amplicon sequencing experiment wherein, two subtypes of Cinachyrella keukenthali may be present in the environment based on microbiome results and some of the ongoing efforts of the global sponge microbiome project. What is poorly understood is the functional potential of the sponge microbiota. We analysed two metagenomes of C. keukenthali to determine non-PCR biased taxonomic makeup, functional potential, metabonomic analysis, and an early look into the microeukaryotes that might be present in the sponge
project name
SAMEA5554618,SAMEA5554619
sample derived from
uncultured Gemmatimonadaceae bacterium
scientific_name
NextSeq 500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: ERP110561_co1_79
title