2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22357922
SRA accession
SRP187154_co1_232
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
terrestrial
broad-scale environmental context
2017-08-17
collection date
69.0
%
completeness score
CheckM2;1.0.2;default
completeness software
3.73
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8648368,SRR8648371 of study SRP187154.
description
terrestrial
environmental medium
not provided
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
soil metagenome
isolation_source
soil biome
local environmental context
soil metagenome
metagenomic source
uncultured Intrasporangiaceae bacterium
organism
Metagenomic characterization of microbial fermentation bed system and ectopic fermentation system
project name
SAMN11039013,SAMN11039016
sample derived from
uncultured Intrasporangiaceae bacterium
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP187154_co1_232
title