2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22364184
SRA accession
SRP308112_co1_364
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
aquatic
broad-scale environmental context
2013-07-07
collection date
78.43
%
completeness score
CheckM2;1.0.2;default
completeness software
3.2
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR13782123,SRR13782130 of study SRP308112.
description
aquatic
environmental medium
Pacific Ocean
geographic location (country and/or sea)
-13.0
DD
geographic location (latitude)
-82.2
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
metagenome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
uncultured bacterium
organism
Oxygen Deficient Zones are areas of the ocean with <10 nM oxygen. Here we sequence a detailed depth profile of the microbial community across the Eastern Tropical South Pacific Oxygen Deficient Zone
project name
SAMN18055980,SAMN18055987
sample derived from
uncultured bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP308112_co1_364
title