2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22440445
SRA accession
binchicken_co393_90
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
83.16
%
completeness score
CheckM2;1.0.2;default
completeness software
4.17
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR14332044,SRR14332047 of study SRP315596.
description
aquatic
environmental medium
USA
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
freshwater metagenome
isolation_source
freshwater biome
local environmental context
freshwater metagenome
metagenomic source
uncultured Flavobacteriaceae bacterium
organism
DNA sequences from environmental samples collected aboard a 3rd Generation Environmental Sample Processor (3G-ESP) attached to a long-range autonomous vehicle. Sample collection took place in Western Lake Erie (WLE) to characterize HABs conditions during the August 2019 bloom. This marks the second year of deploying the 3G-ESP in WLE.
project name
SAMN18335595,SAMN18335592
sample derived from
uncultured Flavobacteriaceae bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co393_90
title