2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22354541
SRA accession
SRP290908_co2_153
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2017-02-26
collection date
79.68
%
completeness score
CheckM2;1.0.2;default
completeness software
0.56
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12997672,SRR12997673 of study SRP290908.
description
aquatic
environmental medium
India
geographic location (country and/or sea)
31.5934
DD
geographic location (latitude)
77.3035
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
hot springs metagenome
isolation_source
hot springs biome
local environmental context
hot springs metagenome
metagenomic source
uncultured Alphaproteobacteria bacterium
organism
Presence of microbial communities in different habitats of Khirganga hot spring.</p><p>Functional profiling and sulfur-reducing potential in all three habitats of the hot spring
project name
SAMN16683882,SAMN16683881
sample derived from
uncultured Alphaproteobacteria bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP290908_co2_153
title