2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22432264
SRA accession
binchicken_co208_22
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
engineered
broad-scale environmental context
not provided
collection date
86.91
%
completeness score
CheckM2;1.0.2;default
completeness software
1.02
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR1352915,ERR4674194 of study ERP014781.
description
engineered
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine metagenome
isolation_source
marine biome
local environmental context
marine metagenome
metagenomic source
uncultured Bifidobacteriaceae bacterium
organism
We are addressing a critical and unresolved ecological question: When are community composition and biodiversity important for the provision of a particular ecosystem function and when are they not? We hypothesize that community composition and biodiversity are more important for rare ecosystem functions than for common ecosystem functions. If an ecosystem function is rare, then differences or changes in community composition could have profound effects on the biotransformation rate of that function. In contrast, if an ecosystem function is common, then differences or changes in community composition are unlikely to have an effect on that function.
project name
SAMEA3920718,SAMEA7392479
sample derived from
uncultured Bifidobacteriaceae bacterium
scientific_name
Illumina HiSeq 2500,Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co208_22
title