2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22358986
SRA accession
SRP193358_co1_595
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
aquatic
broad-scale environmental context
2016-08-30
collection date
97.08
%
completeness score
CheckM2;1.0.2;default
completeness software
0.19
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8942237,SRR8942244 of study SRP193358.
description
aquatic
environmental medium
South Korea
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
riverine metagenome
isolation_source
riverine biome
local environmental context
riverine metagenome
metagenomic source
uncultured Ferruginibacter sp.
organism
Metagenomic DNA samples were collected from planktonic microbial communities at various sites of Han River. Shotgun sequencing and bacterial 16S amplicon sequencing were conducted.
project name
SAMN11312097,SAMN11312099
sample derived from
uncultured Ferruginibacter sp.
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP193358_co1_595
title