2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22432926
SRA accession
binchicken_co236_58
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
engineered
broad-scale environmental context
2016-06-22
collection date
53.76
%
completeness score
CheckM2;1.0.2;default
completeness software
0.0
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR1995156,ERR1995158 of study ERP017130.
description
engineered
environmental medium
USA
geographic location (country and/or sea)
27.542
DD
geographic location (latitude)
-97.286
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
metagenome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
uncultured Spirochaeta sp.
organism
Plastic associated metagenomes from LMFS.
project name
SAMEA4461983,SAMEA4461985
sample derived from
uncultured Spirochaeta sp.
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co236_58
title