2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22360911
SRA accession
SRP222994_co1_577
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
host
broad-scale environmental context
2016-05-02
collection date
80.15
%
completeness score
CheckM2;1.0.2;default
completeness software
0.5
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR10165007,SRR10165008 of study SRP222994.
description
host
environmental medium
Canada
geographic location (country and/or sea)
49.42
DD
geographic location (latitude)
-115.5
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
gut metagenome
isolation_source
gut biome
local environmental context
gut metagenome
metagenomic source
uncultured Eubacteriales bacterium
organism
To understand the microbial basis for the digestion of the plant cell wall in the North American porcupine, Erethizon dorsatum, a shotgun metagenomics approach has been used to examine the taxonomic composition and metabolic potential of the caecum microbiome.
project name
SAMN12796985
sample derived from
uncultured Eubacteriales bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP222994_co1_577
title