2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22431453
SRA accession
binchicken_co176_91
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2015-11
collection date
87.05
%
completeness score
CheckM2;1.0.2;default
completeness software
0.57
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR7091317,SRR7091319 of study SRP144257.
description
aquatic
environmental medium
China
geographic location (country and/or sea)
21.68
DD
geographic location (latitude)
110.88
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
pond metagenome
isolation_source
pond biome
local environmental context
pond metagenome
metagenomic source
uncultured Alteromonas sp.
organism
Metagenomic samples from shrimp pond
project name
SAMN09005325
sample derived from
uncultured Alteromonas sp.
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co176_91
title