2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22361128
SRA accession
binchicken_co317_128
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
86.92
%
completeness score
CheckM2;1.0.2;default
completeness software
1.77
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR17055745,SRR5268549 of study SRP348279.
description
aquatic
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
seawater metagenome
isolation_source
seawater biome
local environmental context
seawater metagenome
metagenomic source
uncultured Gammaproteobacteria bacterium
organism
We used genome-centric metagenomics to undertake a meta-epigenomic investigation of the ocean microbiome. These samples were collected as a part of the SHIPPO (SHIpborne Pole-to-Pole Observations) project of the Korea Polar Research Institute (KOPRI).
project name
SAMN23460435,SAMN06267889
sample derived from
uncultured Gammaproteobacteria bacterium
scientific_name
Illumina HiSeq 4000,Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co317_128
title