2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22431612
SRA accession
binchicken_co180_8
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
76.69
%
completeness score
CheckM2;1.0.2;default
completeness software
1.22
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR4352714,ERR4352721 of study ERP121700.
description
aquatic
environmental medium
North Sea
geographic location (country and/or sea)
54.19
DD
geographic location (latitude)
7.9
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine metagenome
isolation_source
marine biome
local environmental context
marine metagenome
metagenomic source
uncultured Polaribacter sp.
organism
Metagenomic sequencing of surface seawater samples collected during the spring phytoplankton bloom at Helgoland in the year 2018. Plankton samples were collected via sequential filtration on filters with three pore sizes, producing three size fractions. These correspond to the fraction greater than 10 µm in size, the fraction 3-10 µm in size, and the fraction 0.2-3 µm in size. Sequencing was done on the Illumina HiSeq 2500 platform and 2x 250 base pair chemistry.
project name
SAMEA7060537,SAMEA7060538
sample derived from
uncultured Polaribacter sp.
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co180_8
title