2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22355114
SRA accession
SRP301943_co5_7
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
host
broad-scale environmental context
1978
collection date
94.56
%
completeness score
CheckM2;1.0.2;default
completeness software
0.16
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR13443999,SRR13444000 of study SRP301943.
description
host
environmental medium
Philippines
geographic location (country and/or sea)
9.3833
DD
geographic location (latitude)
123.258
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
fish metagenome
isolation_source
fish biome
local environmental context
fish metagenome
metagenomic source
uncultured Candidatus Peribacteria bacterium
organism
Raw sequence reads from the light organs of Siphamia fishes containing symbiotic bioluminescent bacteria
project name
SAMN17043442,SAMN17043441
sample derived from
uncultured Candidatus Peribacteria bacterium
scientific_name
Illumina NovaSeq 6000,Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP301943_co5_7
title