2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22361426
SRA accession
ERP107533_co1_126
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
terrestrial
broad-scale environmental context
2012-12-05T13:00
collection date
69.03
%
completeness score
CheckM2;1.0.2;default
completeness software
0.13
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR2437276,ERR2437277 of study ERP107533.
description
terrestrial
environmental medium
Chile
geographic location (country and/or sea)
-23.138472
DD
geographic location (latitude)
-68.247194
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
microbial mat metagenome
isolation_source
microbial mat biome
local environmental context
microbial mat metagenome
metagenomic source
uncultured Bacteroidaceae bacterium
organism
Atacama region in Chile is one of the most arid locations in the world. Extreme conditions in the area include: high UV irradiation, hypersalinity, drastic temperature changes, and desiccation. Hypersaline lakes can be found in this environment, and therein, bacterial communities thrive in microbial mats and other structures. WGS metagenomics allows to analyze the genes in the environment and infer functional and taxonomic diversity, and also their influence in the biogeochemical setting. In the datasets from this project, two microbial mats from lakes Brava and Tebenquiche, in Atacama region in Chile, were analyzed.
project name
SAMEA81454168
sample derived from
uncultured Bacteroidaceae bacterium
scientific_name
Illumina HiSeq 1500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: ERP107533_co1_126
title