2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22455455
SRA accession
binchicken_co296_41
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
engineered
broad-scale environmental context
not provided
collection date
56.94
%
completeness score
CheckM2;1.0.2;default
completeness software
0.89
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR13076583,SRR13225461 of study SRP292972.
description
engineered
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
bioreactor metagenome
isolation_source
bioreactor biome
local environmental context
bioreactor metagenome
metagenomic source
uncultured Pseudomonas sp.
organism
Reclaiming wastewater treatment plant effluent for reuse is essential for achieving water sustainability. This project aimed to improve understanding of treatment and management requirements for reclaimed water distribution by running a long-term simulated reclaimed water distribution system experiment. Metagenomic samples were collected from water, biofilm and sediment in the distribution system and analyzed for community structure, function and presence of antibiotic resistance genes and pathogens.
project name
SAMN16823270,SAMN17013878
sample derived from
uncultured Pseudomonas sp.
scientific_name
Illumina NovaSeq 6000,HiSeq X Ten
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co296_41
title