2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22431308
SRA accession
binchicken_co16_357
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
engineered
broad-scale environmental context
not provided
collection date
81.83
%
completeness score
CheckM2;1.0.2;default
completeness software
0.82
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR10064596,SRR9733724 of study SRP220221.
description
engineered
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
bioreactor metagenome
isolation_source
bioreactor biome
local environmental context
bioreactor metagenome
metagenomic source
uncultured archaeon
organism
There is to understand the functional diversity of microorganisms that are involved in</p><p>partial denitrification anammox granular sludge through metagenomic analyses.
project name
SAMN12675117,SAMN12268147
sample derived from
uncultured archaeon
scientific_name
Illumina HiSeq 1500,Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co16_357
title