2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22430927
SRA accession
binchicken_co15_23
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
CONCOCT;1.1.0;default
binning software
terrestrial
broad-scale environmental context
not provided
collection date
94.01
%
completeness score
CheckM2;1.0.2;default
completeness software
0.66
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR13334649,SRR13334650 of study SRP299861.
description
terrestrial
environmental medium
USA
geographic location (country and/or sea)
29.56
DD
geographic location (latitude)
-95.1
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
microbial mat metagenome
isolation_source
microbial mat biome
local environmental context
microbial mat metagenome
metagenomic source
uncultured Fibrobacterota bacterium
organism
Metagenomes from 4 depths of a microbial mat from Guerrero Negro.
project name
SAMN09865887,SAMN09865886
sample derived from
uncultured Fibrobacterota bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co15_23
title