2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22372463
SRA accession
SRP345593_co1_44
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2018-09-16
collection date
85.07
%
completeness score
CheckM2;1.0.2;default
completeness software
3.83
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR16916498,SRR16916509 of study SRP345593.
description
aquatic
environmental medium
Atlantic Ocean
geographic location (country and/or sea)
30.124051
DD
geographic location (latitude)
-42.119532
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
hydrothermal vent metagenome
isolation_source
hydrothermal vent biome
local environmental context
hydrothermal vent metagenome
metagenomic source
uncultured Polaribacter sp.
organism
Metagenomes, metatranscriptomes, and SAGs of venting fluids sampled from the Lost City hydrothermal field during the 2018 expedition with R/V Atlantis and ROV Jason 2. 16S rRNA amplicon sequences from these samples are associated with BioProject PRJNA672129.
project name
SAMN16557391
sample derived from
uncultured Polaribacter sp.
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP345593_co1_44
title