2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22443776
SRA accession
SRP090828_co1_101
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
aquatic
broad-scale environmental context
2012-07-11
collection date
72.87
%
completeness score
CheckM2;1.0.2;default
completeness software
0.96
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR4343426,SRR4343439 of study SRP090828.
description
aquatic
environmental medium
USA
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
groundwater metagenome
isolation_source
groundwater biome
local environmental context
groundwater metagenome
metagenomic source
uncultured bacterium
organism
The purpose of this project was to determine the phylogenetic signature and biosynthetic potential of shallow agriculture-contaminated groundwater in California.
project name
SAMN05861671
sample derived from
uncultured bacterium
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP090828_co1_101
title