2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22440374
SRA accession
binchicken_co299_156
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
96.47
%
completeness score
CheckM2;1.0.2;default
completeness software
1.05
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12147746,SRR12147748,SRR13153551,SRR2053290,SRR3933337 of study SRP270047.
description
aquatic
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
seawater metagenome
isolation_source
seawater biome
local environmental context
seawater metagenome
metagenomic source
uncultured Verrucomicrobiales bacterium
organism
The Beaufort Lagoon Ecosystems (BLE) LTER program is an NSF-funded project based out of three nodes along the U.S. Beaufort Sea coast: Utqiagvik (formerly Barrow), Deadhorse, and Kaktovik. At each node, we deploy instruments and collect samples in nearby lagoon systems, each with their own unique characteristics. This research provides a much needed mechanism for tracking and understanding 1) how natural climate cycles influence coastal ecosystems in the Arctic, and 2) climate change effects such as permafrost thaw, shifting precipitation regimes, and losses of sea ice alter coastal ecosystems thorough effects on inputs, nutrient cycling, and ocean mixing.
project name
SAMN11293136,SAMN11293112,SAMN16930146,SAMN03351401,SAMN05416740
sample derived from
uncultured Verrucomicrobiales bacterium
scientific_name
Illumina HiSeq 2000,Illumina HiSeq 2000,Illumina NovaSeq 6000,Illumina HiSeq 2500,Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co299_156
title