2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22372131
SRA accession
SRP342821_co1_37
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2020-10-28
collection date
53.27
%
completeness score
CheckM2;1.0.2;default
completeness software
0.64
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR16548379,SRR16548382 of study SRP342821.
description
aquatic
environmental medium
not provided
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
aquatic metagenome
isolation_source
aquatic biome
local environmental context
aquatic metagenome
metagenomic source
uncultured Hyphomonas sp.
organism
the phytoplankton-bacterial relationships during a bloom
project name
SAMN22502096,SAMN22502094
sample derived from
uncultured Hyphomonas sp.
scientific_name
Illumina HiSeq 1500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP342821_co1_37
title