2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22433119
SRA accession
binchicken_co249_182
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
engineered
broad-scale environmental context
not provided
collection date
61.2
%
completeness score
CheckM2;1.0.2;default
completeness software
0.62
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR4244875,SRR5007357 of study SRP089948.
description
engineered
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
activated sludge metagenome
isolation_source
activated sludge biome
local environmental context
activated sludge metagenome
metagenomic source
uncultured Candidatus Saccharibacteria bacterium
organism
Raman-based microcolony genomics for studying microevolution and ecology of nitrifiers
project name
SAMN05720150,SAMN05720220
sample derived from
uncultured Candidatus Saccharibacteria bacterium
scientific_name
NextSeq 500,Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co249_182
title