2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22443828
SRA accession
SRP090828_co3_39
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2012-07-11
collection date
81.81
%
completeness score
CheckM2;1.0.2;default
completeness software
2.05
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR4343428,SRR4343430 of study SRP090828.
description
aquatic
environmental medium
USA
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
groundwater metagenome
isolation_source
groundwater biome
local environmental context
groundwater metagenome
metagenomic source
uncultured Gammaproteobacteria bacterium
organism
The purpose of this project was to determine the phylogenetic signature and biosynthetic potential of shallow agriculture-contaminated groundwater in California.
project name
SAMN05861673
sample derived from
uncultured Gammaproteobacteria bacterium
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP090828_co3_39
title