2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22359266
SRA accession
SRP199465_co2_281
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
host
broad-scale environmental context
2017
collection date
90.7
%
completeness score
CheckM2;1.0.2;default
completeness software
0.72
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR9122728,SRR9335148 of study SRP199465.
description
host
environmental medium
USA
geographic location (country and/or sea)
30.4449951
DD
geographic location (latitude)
-84.3023827
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
gut metagenome
isolation_source
gut biome
local environmental context
gut metagenome
metagenomic source
uncultured Sangeribacter sp.
organism
The first goal is to establish a shotgun metagenome database of Illumina paired-end reads from the prairie vole (Microtus ochrogaster) from multiple individuals housed in the same colony (within-colony gamma diversity). This will be used as the basis for taxonomic assignment of the most abundant strains from individual animals before and after treatment with inoculation strains. Microbiome alteration is one of the phenotypes to be assayed in animals treated with inoculum. The other phenotypes to be assayed are behavior and neurochemical.
project name
SAMN08875415,SAMN11853144
sample derived from
uncultured Sangeribacter sp.
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP199465_co2_281
title