2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22432778
SRA accession
binchicken_co231_108
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
MEGAHIT;1.2.9;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
aquatic
broad-scale environmental context
2014-03-11
collection date
72.62
%
completeness score
CheckM2;1.0.2;default
completeness software
2.79
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5277143,SRR5279028 of study SRP100472.
description
aquatic
environmental medium
Atlantic Ocean
geographic location (country and/or sea)
53.9944
DD
geographic location (latitude)
6.8905
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine metagenome
isolation_source
marine biome
local environmental context
marine metagenome
metagenomic source
uncultured Nitrospirota bacterium
organism
Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_11 metagenome
project name
SAMN06267522,SAMN06267523
sample derived from
uncultured Nitrospirota bacterium
scientific_name
Illumina HiSeq 2000,Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co231_108
title