2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22372788
SRA accession
binchicken_co84_396
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
MEGAHIT;1.2.9;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
terrestrial
broad-scale environmental context
2019-04-04
collection date
62.7
%
completeness score
CheckM2;1.0.2;default
completeness software
0.31
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12170510,SRR12170511 of study SRP270860.
description
terrestrial
environmental medium
USA
geographic location (country and/or sea)
29.64
DD
geographic location (latitude)
-82.34
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
soil metagenome
isolation_source
soil biome
local environmental context
soil metagenome
metagenomic source
uncultured Gemmatimonadaceae bacterium
organism
Imperata cylindrica (L.) Beauv. was affected by nutrient and water stress
project name
SAMN15470937,SAMN15470936
sample derived from
uncultured Gemmatimonadaceae bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co84_396
title