2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22443154
SRA accession
SRP068000_co1_128
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2013-05
collection date
96.64
%
completeness score
CheckM2;1.0.2;default
completeness software
0.62
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR3085416,SRR3085435 of study SRP068000.
description
aquatic
environmental medium
Denmark
geographic location (country and/or sea)
56.1033
DD
geographic location (latitude)
10.4578
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine sediment metagenome
isolation_source
marine sediment biome
local environmental context
marine sediment metagenome
metagenomic source
uncultured Pirellulales bacterium
organism
The study aims at describing the identity and activity of airborne microorganisms as well as the potential sources from where the cells got aerosolized.
project name
SAMN04328855
sample derived from
uncultured Pirellulales bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP068000_co1_128
title