2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22451509
SRA accession
SRP090399_co3_39
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
aquatic
broad-scale environmental context
2016-03-21
collection date
66.45
%
completeness score
CheckM2;1.0.2;default
completeness software
1.93
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR8816318 of study SRP090399.
description
aquatic
environmental medium
Puerto Rico
geographic location (country and/or sea)
17.00000000
DD
geographic location (latitude)
-67.00000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
metagenome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
uncultured Halobellus sp.
organism
Culture independent study of microbial communities in hypersaline environments in a tropical solar saltern in Cabo Rojo, Puerto Rico. This project aims to determine the diversity present using direct 16S rRNA amplification. A different diversity is expected due to the stable conditions year round which in turn may lead to identification of new species.
project name
SAMN11289319
sample derived from
uncultured Halobellus sp.
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP090399_co3_39
title