2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22437787
SRA accession
binchicken_co39_536
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
engineered
broad-scale environmental context
2017-11-08
collection date
88.84
%
completeness score
CheckM2;1.0.2;default
completeness software
0.12
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8925752,SRR8925753 of study SRP192927.
description
engineered
environmental medium
China
geographic location (country and/or sea)
31.56
DD
geographic location (latitude)
121.68
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
bioreactor metagenome
isolation_source
bioreactor biome
local environmental context
bioreactor metagenome
metagenomic source
uncultured Eubacteriales bacterium
organism
In this study, we investigated the metagenome of digestate samples from 56 full-scale biogas plants in China, and compared the differences of microbial communities in biogas plants.
project name
SAMN11458209,SAMN11458210
sample derived from
uncultured Eubacteriales bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co39_536
title