2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22354347
SRA accession
SRP287453_co1_92
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
engineered
broad-scale environmental context
not provided
collection date
73.66
%
completeness score
CheckM2;1.0.2;default
completeness software
1.15
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12830358,SRR12830359 of study SRP287453.
description
engineered
environmental medium
not provided
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
bioreactor metagenome
isolation_source
bioreactor biome
local environmental context
bioreactor metagenome
metagenomic source
uncultured bacterium
organism
Comammox was dominant in ammonia oxidizing microorganism.
project name
SAMN16445485,SAMN16445484
sample derived from
uncultured bacterium
scientific_name
Illumina MiSeq
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP287453_co1_92
title