2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22192757
SRA accession
SRP252850_co1_211
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
terrestrial
broad-scale environmental context
not provided
collection date
87.97
%
completeness score
CheckM2;1.0.2;default
completeness software
0.54
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11308338,SRR11308339 of study SRP252850.
description
terrestrial
environmental medium
Mexico
geographic location (country and/or sea)
26.8283
DD
geographic location (latitude)
-102.024639
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
microbial mat metagenome
isolation_source
microbial mat biome
local environmental context
microbial mat metagenome
metagenomic source
uncultured Candidatus Sumerlaeota bacterium
organism
Cuatro Cienegas Basin is an endangered oasis with several ponds, rivers and springs within northern Mexico that has been proposed as a relictual site of a marine origin. During late March 2016, an unusual spring rain dissolved the salty crust of a pond we had not noticed before, allowing a microbial mat with a very unusual flexible bubble-containing superficial layer to emerge. These time series metagenome collection will allow various studies on the ecology, diversity and temporal changes within the community of this newly discovered microbial mat.
project name
SAMN14380052,SAMN14380051
sample derived from
uncultured Candidatus Sumerlaeota bacterium
scientific_name
Illumina MiSeq
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP252850_co1_211
title