2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22439313
SRA accession
binchicken_co53_23
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
96.04
%
completeness score
CheckM2;1.0.2;default
completeness software
0.71
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR9822617,SRR9822619 of study SRP216209.
description
aquatic
environmental medium
Indian Ocean
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
hydrothermal vent metagenome
isolation_source
hydrothermal vent biome
local environmental context
hydrothermal vent metagenome
metagenomic source
uncultured Candidatus Saccharibacteria bacterium
organism
The Old City hydrothermal field is a serpentinite-hosted ecosystem. As an analogue of the Lost City hydrothermal field, it offers the opportunity to study the microbial ecology influenced by serpentinization in such particular ecosystems.
project name
SAMN12349586,SAMN12349584
sample derived from
uncultured Candidatus Saccharibacteria bacterium
scientific_name
NextSeq 500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co53_23
title