2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22455414
SRA accession
SRP272421_co1_700
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
aquatic
broad-scale environmental context
2017-09-08
collection date
91.49
%
completeness score
CheckM2;1.0.2;default
completeness software
5.12
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12261226,SRR12261227 of study SRP272421.
description
aquatic
environmental medium
USA
geographic location (country and/or sea)
43.099
DD
geographic location (latitude)
-89.405
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
freshwater metagenome
isolation_source
freshwater biome
local environmental context
freshwater metagenome
metagenomic source
uncultured Caldilinea sp.
organism
Metagenomic survey of microbial communities during late anoxia in Lake Mendota
project name
SAMN15573538,SAMN15573537
sample derived from
uncultured Caldilinea sp.
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP272421_co1_700
title