2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22361205
SRA accession
ERP019367_co1_108
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
aquatic
broad-scale environmental context
2015-06
collection date
67.04
%
completeness score
CheckM2;1.0.2;default
completeness software
1.04
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR2281800,ERR2281801 of study ERP019367.
description
aquatic
environmental medium
Australia
geographic location (country and/or sea)
22.38
DD
geographic location (latitude)
113.78
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
metagenome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
uncultured Alphaproteobacteria bacterium
organism
Bundera sinkhole is an anchialine ecosystem located in north-western Australia. It has a highly stratified physico-chemical profile which is reflected in the microbial community structure of each strata. This study is the first to perform shotgun metagenomics on communities inhabiting a selection of depths: 2, 8, 17, 18, 22 and 28 m.
project name
SAMEA104564998,SAMEA104564999
sample derived from
uncultured Alphaproteobacteria bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: ERP019367_co1_108
title