2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22458222
SRA accession
binchicken_co370_210
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
host
broad-scale environmental context
not provided
collection date
89.17
%
completeness score
CheckM2;1.0.2;default
completeness software
3.56
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11183726,SRR6824180 of study SRP188615.
description
host
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
pig gut metagenome
isolation_source
pig gut biome
local environmental context
pig gut metagenome
metagenomic source
uncultured Ruminococcus sp.
organism
Study of pig microbiome in response to antibiotic
project name
SAMN11098517,SAMN08628875
sample derived from
uncultured Ruminococcus sp.
scientific_name
Illumina NovaSeq 6000,Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co370_210
title