2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22431644
SRA accession
binchicken_co183_12
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
terrestrial
broad-scale environmental context
2016-08-10
collection date
83.73
%
completeness score
CheckM2;1.0.2;default
completeness software
1.29
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR6957438,SRR7975955 of study SRP138007.
description
terrestrial
environmental medium
USA
geographic location (country and/or sea)
37.876387
DD
geographic location (latitude)
-122.246777
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
surface metagenome
isolation_source
surface biome
local environmental context
surface metagenome
metagenomic source
uncultured Stakelama sp.
organism
Analysis of the solar panel surface microbial communities
project name
SAMN08776901,SAMN08779526
sample derived from
uncultured Stakelama sp.
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co183_12
title