2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22451040
SRA accession
binchicken_co26_208
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
engineered
broad-scale environmental context
not provided
collection date
93.87
%
completeness score
CheckM2;1.0.2;default
completeness software
6.02
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR4519286,ERR4539293 of study ERP123608.
description
engineered
environmental medium
not provided
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
metagenome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
uncultured Chloroflexia bacterium
organism
This study propose to elucidate community dynamic of previously observed growing granules in anaerobic digester. Communities of varied size granules are explored by the use of WGS as well as nanopore sequencing.
project name
SAMEA7233238,SAMEA7233248
sample derived from
uncultured Chloroflexia bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co26_208
title