2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22192943
SRA accession
SRP257259_co1_389
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
aquatic
broad-scale environmental context
2018-02-01
collection date
98.77
%
completeness score
CheckM2;1.0.2;default
completeness software
0.12
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11567520,SRR11567528 of study SRP257259.
description
aquatic
environmental medium
Puerto Rico
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
freshwater metagenome
isolation_source
freshwater biome
local environmental context
freshwater metagenome
metagenomic source
uncultured Candidatus Saccharibacteria bacterium
organism
Deferentially wastewater-impacted watersheds were sampled on the island of Puerto Rico 6-months after Hurricane Maria to assess the effects of wastewater treatment plant effluents on the proliferation of antibiotic resistance determinants and pathogens. The water column and sediments of 3 different watersheds were sampled, as well as the influent and effluent the Patillas wastewater treatment plant.
project name
SAMN14638999,SAMN14639012
sample derived from
uncultured Candidatus Saccharibacteria bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP257259_co1_389
title