2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22274321
SRA accession
SRP287051_co2_66
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
engineered
broad-scale environmental context
not provided
collection date
88.47
%
completeness score
CheckM2;1.0.2;default
completeness software
3.01
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12816583,SRR12822863 of study SRP287208.
description
engineered
environmental medium
China
geographic location (country and/or sea)
39.95
DD
geographic location (latitude)
116.3
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
biofilter metagenome
isolation_source
biofilter biome
local environmental context
biofilter metagenome
metagenomic source
uncultured Sphingobium sp.
organism
Metagenomics analysis could provide the possibility to investigate the microbial composition and functional potential. In this study, four samples were collected to study their bacterial community structure and fuctional potentials.
project name
SAMN16427088,SAMN16434400
sample derived from
uncultured Sphingobium sp.
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP287051_co2_66
title