2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22459770
SRA accession
SRP109090_co2_44
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
engineered
broad-scale environmental context
not provided
collection date
61.14
%
completeness score
CheckM2;1.0.2;default
completeness software
2.2
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8304783,SRR8304786 of study SRP109090.
description
engineered
environmental medium
not provided
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
synthetic metagenome
isolation_source
synthetic biome
local environmental context
synthetic metagenome
metagenomic source
uncultured Dehalococcoidia bacterium
organism
A synthetic metagenome was constructed by mixing DNA from 51 bacteria, for the purposes of benchmarking metagenomic binning algorithms.
project name
SAMN10581937,SAMN10581938
sample derived from
uncultured Dehalococcoidia bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP109090_co2_44
title