2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22390354
SRA accession
binchicken_co288_14
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
88.78
%
completeness score
CheckM2;1.0.2;default
completeness software
2.91
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR594390,ERR599346,ERR599350,ERR599353,ERR599378 of study ERP003708.
description
aquatic
environmental medium
not provided
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine metagenome
isolation_source
marine biome
local environmental context
marine metagenome
metagenomic source
uncultured Ulvibacter sp.
organism
Seawater from different depths was precipitaded then filtered to retain small particle sizes (Virus particles). The DNA was extracted and submitted to high throughput sequencing.
project name
SAMEA2619923,SAMEA2622212,SAMEA2619872,SAMEA2622190,SAMEA2622725
sample derived from
uncultured Ulvibacter sp.
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co288_14
title