2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22359575
SRA accession
SRP200132_co1_594
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
terrestrial
broad-scale environmental context
2018-09
collection date
82.62
%
completeness score
CheckM2;1.0.2;default
completeness software
2.12
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR9179560,SRR9179562 of study SRP200132.
description
terrestrial
environmental medium
Switzerland
geographic location (country and/or sea)
47.426944
DD
geographic location (latitude)
8.518333
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
soil metagenome
isolation_source
soil biome
local environmental context
soil metagenome
metagenomic source
uncultured Candidatus Saccharibacteria bacterium
organism
Bacteriophages are the most numerous biological entities on earth and play a crucial role in shaping microbial communities. Unfortunately, the study of soil viromes lags far behind any other ecological model system, due to the heterogeneous soil matrix that rises major technical difficulties in the extraction process. We have analysed by high-throughput metagenomics the viral and bacterial fractions of several agricultural soils from one of the oldest arable long-term field experiment in Europe (ZOFE, Zurich Organic Fertilization Experiment)), which implements different fertilization practices. We have also analysed the optimization of protocols for extraction of the viral fraction from the same soil matrix preceding metagenomic analysis such that the protocol can equally be harnessed for phage isolation. This bioproject contains several viral and bacterial metagenomes.
project name
SAMN11866225,SAMN11866228
sample derived from
uncultured Candidatus Saccharibacteria bacterium
scientific_name
NextSeq 500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP200132_co1_594
title