2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22459204
SRA accession
SRP219642_co8_619
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
aquatic
broad-scale environmental context
2017-08-18
collection date
62.61
%
completeness score
CheckM2;1.0.2;default
completeness software
1.3
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR10036018,SRR10036034 of study SRP219642.
description
aquatic
environmental medium
USA
geographic location (country and/or sea)
38.943062
DD
geographic location (latitude)
-94.593613
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
freshwater metagenome
isolation_source
freshwater biome
local environmental context
freshwater metagenome
metagenomic source
uncultured Limnohabitans sp.
organism
Shotgun Illumina HiSeq sequencing of environmental whole genomes (metagenomes) in water samples from an urban watershed
project name
SAMN12647040,SAMN12647042
sample derived from
uncultured Limnohabitans sp.
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP219642_co8_619
title