2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22432663
SRA accession
binchicken_co227_222
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
64.49
%
completeness score
CheckM2;1.0.2;default
completeness software
1.24
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12113420,SRR12113433 of study SRP269290.
description
aquatic
environmental medium
USA
geographic location (country and/or sea)
37.661915
DD
geographic location (latitude)
-121.114554
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
groundwater metagenome
isolation_source
groundwater biome
local environmental context
groundwater metagenome
metagenomic source
uncultured Gammaproteobacteria bacterium
organism
Metagenomes from eight shallow groundwater sites across Northern California. "Huge and variable diversity of episymbiotic CPR bacteria and DPANN archaea in groundwater ecosystems", by He et al.
project name
SAMN15319622,SAMN15319610
sample derived from
uncultured Gammaproteobacteria bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co227_222
title