2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22355070
SRA accession
SRP298887_co1_353
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
aquatic
broad-scale environmental context
2016-09
collection date
92.23
%
completeness score
CheckM2;1.0.2;default
completeness software
2.6
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR13287418,SRR13287419 of study SRP298887.
description
aquatic
environmental medium
China
geographic location (country and/or sea)
39.9
DD
geographic location (latitude)
116.53
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
wastewater metagenome
isolation_source
wastewater biome
local environmental context
wastewater metagenome
metagenomic source
uncultured Holosporaceae bacterium
organism
to investigate upgrade of municipal WWTP on microbial community and antibiotic resistance genes of receiving river
project name
SAMN17132278,SAMN17132279
sample derived from
uncultured Holosporaceae bacterium
scientific_name
HiSeq X Ten
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP298887_co1_353
title