2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22357714
SRA accession
SRP182702_co1_153
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
MEGAHIT;1.2.9;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
engineered
broad-scale environmental context
2018-01-17/2018-01-26
collection date
74.85
%
completeness score
CheckM2;1.0.2;default
completeness software
4.6
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8497110,SRR8497111 of study SRP182702.
description
engineered
environmental medium
Hong Kong
geographic location (country and/or sea)
22.34
DD
geographic location (latitude)
114.27
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
biofilm metagenome
isolation_source
biofilm biome
local environmental context
biofilm metagenome
metagenomic source
uncultured Rhizobiaceae bacterium
organism
Through the comparison of metagenomes, we aim to highlight the roles of quorum sensing signals play in biofilm community, and explore the different impacts of each molecules.
project name
SAMN10712703
sample derived from
uncultured Rhizobiaceae bacterium
scientific_name
HiSeq X Ten
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP182702_co1_153
title