2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22365164
SRA accession
SRP321284_co1_104
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
terrestrial
broad-scale environmental context
2020-01-10
collection date
93.99
%
completeness score
CheckM2;1.0.2;default
completeness software
1.48
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR14640484,SRR14640486 of study SRP321284.
description
terrestrial
environmental medium
India
geographic location (country and/or sea)
21.9497
DD
geographic location (latitude)
89.1833
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
sediment metagenome
isolation_source
sediment biome
local environmental context
sediment metagenome
metagenomic source
uncultured Porticoccus sp.
organism
GHGs emitted from mangrove sediments or rice rhizospheric soil through different microbial processes like methanogenesis, nitrification, denitrification etc. So the microbial diversity of different groups were directly correlated with the GHGs emission.
project name
SAMN19328051,SAMN19328049
sample derived from
uncultured Porticoccus sp.
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP321284_co1_104
title