2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22458176
SRA accession
binchicken_co342_27
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
terrestrial
broad-scale environmental context
2016-03-15
collection date
64.08
%
completeness score
CheckM2;1.0.2;default
completeness software
1.44
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5468104,SRR5468105 of study SRP104811.
description
terrestrial
environmental medium
China
geographic location (country and/or sea)
36.4636
DD
geographic location (latitude)
116.058
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
sediment metagenome
isolation_source
sediment biome
local environmental context
sediment metagenome
metagenomic source
uncultured Aeromicrobium sp.
organism
To investigate the sediments microbial communities and the inherent connections between the emission of greenhouse gases and microbes.
project name
SAMN06718357
sample derived from
uncultured Aeromicrobium sp.
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co342_27
title