2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22432843
SRA accession
binchicken_co234_131
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
84.74
%
completeness score
CheckM2;1.0.2;default
completeness software
4.31
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5468423,SRR5468432 of study SRP104924.
description
aquatic
environmental medium
USA
geographic location (country and/or sea)
47.0991
DD
geographic location (latitude)
-99.1044
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
freshwater sediment metagenome
isolation_source
freshwater sediment biome
local environmental context
freshwater sediment metagenome
metagenomic source
uncultured Anaerolineaceae bacterium
organism
Metagenome sequencing of total DNA extracted from a series of sediment cores collected at the USGS Cottonwood Lakes prairie pothole lake research site near Jamestown, North Dakota
project name
SAMN06267051,SAMN06266209
sample derived from
uncultured Anaerolineaceae bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co234_131
title