2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22390356
SRA accession
binchicken_co316_159
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
78.09
%
completeness score
CheckM2;1.0.2;default
completeness software
2.42
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR3589589,SRR3933337 of study ERP010880.
description
aquatic
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
seawater metagenome
isolation_source
seawater biome
local environmental context
seawater metagenome
metagenomic source
uncultured Rhodospirillaceae bacterium
organism
Analysis of the genes and genomes present in Tara Oceans Polar Circle prokaryote size fractions through shotgun DNA sequencing. Seawater was filtered from different depths to retain small cell sizes (Bacteria Organisms). The DNA was extracted and submitted to high throughput sequencing.
project name
SAMEA4397390,SAMN05416740
sample derived from
uncultured Rhodospirillaceae bacterium
scientific_name
Illumina HiSeq 2500,Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co316_159
title