2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22460254
SRA accession
binchicken_co122_15
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2016-07-03
collection date
85.74
%
completeness score
CheckM2;1.0.2;default
completeness software
1.66
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12623519,SRR12623520 of study SRP282044.
description
aquatic
environmental medium
Atlantic Ocean
geographic location (country and/or sea)
43.010478
DD
geographic location (latitude)
-60.211777
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
cold seep metagenome
isolation_source
cold seep biome
local environmental context
cold seep metagenome
metagenomic source
uncultured Thermoplasmatales archaeon
organism
We performed metagenomic sequencing to profile the composition and function of deep sea benthic microbial communities spanning different redox regimes in the Scotian Basin seabed (2.3 km water depth).
project name
SAMN13702310,SAMN13702311
sample derived from
uncultured Thermoplasmatales archaeon
scientific_name
NextSeq 500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co122_15
title