2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22273726
SRA accession
SRP278314_co2_238
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
engineered
broad-scale environmental context
2019-01
collection date
98.16
%
completeness score
CheckM2;1.0.2;default
completeness software
0.26
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12489244,SRR12489248 of study SRP278314.
description
engineered
environmental medium
China
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
bioreactor sludge metagenome
isolation_source
bioreactor sludge biome
local environmental context
bioreactor sludge metagenome
metagenomic source
uncultured bacterium
organism
Metagenomic analysis can more truly reflect the microbial composition and interaction in the sample, and study the metabolic pathway and gene function at the molecular level
project name
SAMN15870262,SAMN15870264
sample derived from
uncultured bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP278314_co2_238
title