2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22458071
SRA accession
binchicken_co315_54
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
engineered
broad-scale environmental context
not provided
collection date
98.95
%
completeness score
CheckM2;1.0.2;default
completeness software
1.39
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR7939969,SRR9997720 of study SRP162853.
description
engineered
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
activated sludge metagenome
isolation_source
activated sludge biome
local environmental context
activated sludge metagenome
metagenomic source
uncultured Roseivirgaceae bacterium
organism
In this study, two combined nitritation and Anammox reactors with or without the addition of organics were operated. Effects of organics on nitrogen removal, biofilm formation and microbial community were investigated, and microbial interactions from QS and the role of QS were examined. In addition, the possible microbial cooperations in nitrogen removal and biofilm formation were clarified. These results could provide deep insights into microbial interactions from QS in the Anammox system.
project name
SAMN10141348,SAMN12606010
sample derived from
uncultured Roseivirgaceae bacterium
scientific_name
Illumina MiSeq,Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co315_54
title