2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22432963
SRA accession
binchicken_co23_225
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
MEGAHIT;1.2.9;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
terrestrial
broad-scale environmental context
2017-07-08
collection date
89.2
%
completeness score
CheckM2;1.0.2;default
completeness software
0.9
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8581213,SRR8581214 of study SRP185967.
description
terrestrial
environmental medium
India
geographic location (country and/or sea)
31.59297
DD
geographic location (latitude)
77.30349
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
microbial mat metagenome
isolation_source
microbial mat biome
local environmental context
microbial mat metagenome
metagenomic source
uncultured bacterium
organism
Sequencing of hot spring microbial mat from Indian Himalayas
project name
SAMN10948629,SAMN10948628
sample derived from
uncultured bacterium
scientific_name
Illumina MiSeq
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co23_225
title