2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22357275
SRA accession
SRP170004_co1_530
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
aquatic
broad-scale environmental context
2018-05
collection date
91.04
%
completeness score
CheckM2;1.0.2;default
completeness software
0.13
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12404947,SRR12404962 of study SRP170004.
description
aquatic
environmental medium
South Korea
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
metagenome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
uncultured Candidatus Saccharibacteria bacterium
organism
Investigating the prevalence of antibiotic resistance genes and heavy metal resistance genes along with bacterial community in wastewater treatment plant
project name
SAMN15090774,SAMN15090775
sample derived from
uncultured Candidatus Saccharibacteria bacterium
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP170004_co1_530
title