2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22443940
SRA accession
SRP092902_co1_174
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2015-10-15
collection date
94.93
%
completeness score
CheckM2;1.0.2;default
completeness software
1.62
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5007141,SRR5007147 of study SRP092902.
description
aquatic
environmental medium
Spain
geographic location (country and/or sea)
37.35361
DD
geographic location (latitude)
-0.286194
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine metagenome
isolation_source
marine biome
local environmental context
marine metagenome
metagenomic source
uncultured Acidobacteriota bacterium
organism
In the Mediterranean and other temperate waters, the stratification of the water column is a seasonal phenomenon that usually starts in April and ends in November. In this work, we have analyzed by high throughput metagenomics a fine profile of a stratified water column off the coast of Alicante, at 60 nautical miles, collected in October 2015. The bioproject contains several metagenomes and assembled genomes recovered from the same location but at different depths (15, 30, 45, 60, 75, 90, 1000 and 2000 m).
project name
SAMN05992385,SAMN05992386
sample derived from
uncultured Acidobacteriota bacterium
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP092902_co1_174
title