2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22431074
SRA accession
binchicken_co164_80
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
70.93
%
completeness score
CheckM2;1.0.2;default
completeness software
0.91
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5149607,SRR8443420 of study SRP096149.
description
aquatic
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
hydrothermal vent metagenome
isolation_source
hydrothermal vent biome
local environmental context
hydrothermal vent metagenome
metagenomic source
uncultured Planctomycetia bacterium
organism
Research high diversity of cultivable heterotrophic bacteria and metabolism function in the shallow-sea hydrothermal system.
project name
SAMN06140895,SAMN10739806
sample derived from
uncultured Planctomycetia bacterium
scientific_name
Illumina MiSeq,HiSeq X Ten
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co164_80
title