2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22192704
SRA accession
SRP249901_co1_45
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2018-07-28
collection date
63.87
%
completeness score
CheckM2;1.0.2;default
completeness software
0.7
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11106616,SRR11106617 of study SRP249901.
description
aquatic
environmental medium
not provided
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
mangrove metagenome
isolation_source
mangrove biome
local environmental context
mangrove metagenome
metagenomic source
uncultured Cytophagales bacterium
organism
Comparative analysis the community structure and diversity of bacteria and archaea in Dongzhai Harbor Mangrove soil and water using 16S rRNA gene sequencing and shotgun metagenomics sequencing
project name
SAMN14114377,SAMN14114376
sample derived from
uncultured Cytophagales bacterium
scientific_name
HiSeq X Ten
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP249901_co1_45
title