2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22451758
SRA accession
binchicken_co356_33
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
86.75
%
completeness score
CheckM2;1.0.2;default
completeness software
4.61
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR2090168,SRR3989311 of study SRP060520.
description
aquatic
environmental medium
USA
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
groundwater metagenome
isolation_source
groundwater biome
local environmental context
groundwater metagenome
metagenomic source
uncultured Elusimicrobiales bacterium
organism
Subsurface processes impact the composition and functioning of the biosphere and atmosphere over both short and geological timescales. Below the soil zone, the microorganisms that mediate transformations of nutrients, trace gases and contaminants are particularly poorly understood. Here, we analyzed 2,542 high-quality draft and complete bacterial and archaeal genomes newly reconstructed from terabases of sequence data collected from sediment and groundwater. This unprecedented scale of genome sampling from a single site represents ~28% of the organisms detected. Analysis of the genome dataset revealed that multiple organisms, including some from ~34 newly detected phyla, are often required to complete redox pathways. Thus, we infer that a complex network of metabolic handoffs extensively cross-links subsurface biogeochemical cycles.
project name
SAMN03842446,SAMN05421977
sample derived from
uncultured Elusimicrobiales bacterium
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co356_33
title