2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22355171
SRA accession
SRP302447_co1_810
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
terrestrial
broad-scale environmental context
2018-01-31
collection date
65.76
%
completeness score
CheckM2;1.0.2;default
completeness software
0.36
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR13723393,SRR13723394 of study SRP302447.
description
terrestrial
environmental medium
USA
geographic location (country and/or sea)
40.6667
DD
geographic location (latitude)
-77.9027
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
rock metagenome
isolation_source
rock biome
local environmental context
rock metagenome
metagenomic source
uncultured Gammaproteobacteria bacterium
organism
This study investigates the role of microorganisms in the subsurface weathering of pyrite in shale using in situ and enrichment culture metagenomes and 16S rRNA gene sequencing.
project name
SAMN17384475,SAMN17384474
sample derived from
uncultured Gammaproteobacteria bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP302447_co1_810
title