2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22187512
SRA accession
ERP123247_co1_147
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
aquatic
broad-scale environmental context
2018-07-09
collection date
99.14
%
completeness score
CheckM2;1.0.2;default
completeness software
0.01
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR4405439,ERR4405440 of study ERP123247.
description
aquatic
environmental medium
Switzerland
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
metagenome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
uncultured Candidatus Saccharibacteria bacterium
organism
The antibiotic resistome is unveiled for two wastewater treatment plants and their receiving river streams in Switzerland. (Ref. Lee et al., 2021. Water Research, 197. 117050 https://doi.org/10.1016/j.watres.2021.117050)
project name
SAMEA7118389,SAMEA7118390
sample derived from
uncultured Candidatus Saccharibacteria bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: ERP123247_co1_147
title