2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22431394
SRA accession
binchicken_co173_516
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
engineered
broad-scale environmental context
not provided
collection date
63.61
%
completeness score
CheckM2;1.0.2;default
completeness software
1.56
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5431133,SRR8449813 of study SRP103437.
description
engineered
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
anaerobic digester metagenome
isolation_source
anaerobic digester biome
local environmental context
anaerobic digester metagenome
metagenomic source
uncultured Novosphingobium sp.
organism
The metagenome of the anaerobic co-digestion consortia
project name
SAMN06699085,SAMN10350574
sample derived from
uncultured Novosphingobium sp.
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co173_516
title