2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22449949
SRA accession
SRP338948_co1_58
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
MEGAHIT;1.2.9;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
host
broad-scale environmental context
not provided
collection date
96.91
%
completeness score
CheckM2;1.0.2;default
completeness software
0.03
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR16090826,SRR16090827 of study SRP338948.
description
host
environmental medium
Viet Nam
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
sponge metagenome
isolation_source
sponge biome
local environmental context
sponge metagenome
metagenomic source
uncultured Rhodothermaceae bacterium
organism
Vietnamese sponge-associated microorganism metagenome
project name
SAMN21845638,SAMN21845637
sample derived from
uncultured Rhodothermaceae bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP338948_co1_58
title