2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22356899
SRA accession
SRP162660_co1_281
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
aquatic
broad-scale environmental context
2016-09
collection date
63.55
%
completeness score
CheckM2;1.0.2;default
completeness software
1.16
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR7905022,SRR7905024 of study SRP162660.
description
aquatic
environmental medium
Japan
geographic location (country and/or sea)
34.318
DD
geographic location (latitude)
139.216
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
hot springs metagenome
isolation_source
hot springs biome
local environmental context
hot springs metagenome
metagenomic source
uncultured Planctomycetota bacterium
organism
The goal of this project was to characterize the microbial community of Japanese hot springs as unique analogs of early Earth environments, including those in which geobiologically important rock types like stromatolites and banded iron formations were deposited. Understanding the diversity and metabolisms of microbes in these environments, and the geochemical cycling they support, will help us to understand how these rock types may have formed early in Earth history.
project name
SAMN10130913,SAMN10130912
sample derived from
uncultured Planctomycetota bacterium
scientific_name
Illumina HiSeq 3000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP162660_co1_281
title