2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22361598
SRA accession
ERP108616_co2_62
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2017
collection date
89.84
%
completeness score
CheckM2;1.0.2;default
completeness software
4.87
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR2564002,ERR2564004 of study ERP108616.
description
aquatic
environmental medium
not provided
geographic location (country and/or sea)
22.318083
DD
geographic location (latitude)
72.618988
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
metagenome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
uncultured Nitrospirota bacterium
organism
Community structure and pollutant degradation ability of deep sediment microflora of Gulf of Khambhat using culture independent approach
project name
SAMEA4646282,SAMEA4646284
sample derived from
uncultured Nitrospirota bacterium
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: ERP108616_co2_62
title