2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22438478
SRA accession
ERP119702_co1_309
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
aquatic
broad-scale environmental context
2016-09-14
collection date
86.64
%
completeness score
CheckM2;1.0.2;default
completeness software
0.03
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR3856787,ERR3856788 of study ERP119702.
description
aquatic
environmental medium
Switzerland
geographic location (country and/or sea)
47.0925
DD
geographic location (latitude)
8.4891
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
freshwater metagenome
isolation_source
freshwater biome
local environmental context
freshwater metagenome
metagenomic source
uncultured Enterobacteriaceae bacterium
organism
DNA and total RNA was extracted from water from of the anoxic hypolimnion of a freshwater lake in two years (2016, 2018). DNA was used for metagenomic sequencing (2x250 bp, Illumina HiSeq 2500). For metatranscriptome sequencing, total RNA was subjected to rRNA depletion followed by reverse transcription and sequencing of cDNA (1x150 bp, Illumina HiSeq 3000).
project name
SAMN07599904,SAMN07599903
sample derived from
uncultured Enterobacteriaceae bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: ERP119702_co1_309
title