2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22390378
SRA accession
binchicken_co307_119
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
MEGAHIT;1.2.9;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
72.52
%
completeness score
CheckM2;1.0.2;default
completeness software
1.24
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR1726569,ERR1726913 of study ERP003628.
description
aquatic
environmental medium
not provided
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine metagenome
isolation_source
marine biome
local environmental context
marine metagenome
metagenomic source
uncultured Oligoflexia bacterium
organism
Seawater was filtered from different depths to retain small and large cell sizes. The DNA was extracted and submitted to high throughput sequencing.
project name
SAMEA2622769,SAMEA2622719
sample derived from
uncultured Oligoflexia bacterium
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co307_119
title