2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22360743
SRA accession
SRP222552_co1_94
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
host
broad-scale environmental context
2015-09-02
collection date
81.39
%
completeness score
CheckM2;1.0.2;default
completeness software
1.31
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR10148553,SRR10148554 of study SRP222552.
description
host
environmental medium
Canada
geographic location (country and/or sea)
49.42
DD
geographic location (latitude)
-112.5
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
metagenome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
uncultured Roseburia sp.
organism
Shotgun metagenomics was used to examine the composition and metabolic potential of the caecum in the North American beaver, Castor canadensis
project name
SAMN12788353
sample derived from
uncultured Roseburia sp.
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP222552_co1_94
title