2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22440158
SRA accession
binchicken_co105_310
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
aquatic
broad-scale environmental context
2017-06-13
collection date
73.75
%
completeness score
CheckM2;1.0.2;default
completeness software
0.03
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8893623,SRR8893624 of study SRP192515.
description
aquatic
environmental medium
China
geographic location (country and/or sea)
31.8
DD
geographic location (latitude)
118.5
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
wastewater metagenome
isolation_source
wastewater biome
local environmental context
wastewater metagenome
metagenomic source
uncultured Gammaproteobacteria bacterium
organism
Integrated metagenomic and metatranscriptomic analyses of ultraviolet disinfection effects on antibiotic resistance genes during wastewater treatment
project name
SAMN11412378,SAMN11412375
sample derived from
uncultured Gammaproteobacteria bacterium
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co105_310
title