2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22437680
SRA accession
binchicken_co395_172
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
terrestrial
broad-scale environmental context
2016-09-15
collection date
92.36
%
completeness score
CheckM2;1.0.2;default
completeness software
3.53
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8652710,SRR8652715 of study SRP187249.
description
terrestrial
environmental medium
Mexico
geographic location (country and/or sea)
19.51
DD
geographic location (latitude)
-98.55
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
sediment metagenome
isolation_source
sediment biome
local environmental context
sediment metagenome
metagenomic source
uncultured Ignavibacteria bacterium
organism
Lake Chalco is one of the last remains left a large lacustrine system by the growth of Mexico City, which was settlement area of significant pre-columbine civilizations, including Aztecs that flourished in this area at the end of the XV century. We describe the prokaryotic and eukaryotic community structure, and gene function analysis of the past 12,000 years, from a sedimentary sequence of Lake Chalco. This study contributed to the understanding of the Holocene period within an area with well characterized environmental conditions of a Neotropical region.
project name
SAMN10939631,SAMN10939625
sample derived from
uncultured Ignavibacteria bacterium
scientific_name
NextSeq 500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co395_172
title