2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22453399
SRA accession
SRP163575_co3_317
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
aquatic
broad-scale environmental context
2008-07-24
collection date
91.19
%
completeness score
CheckM2;1.0.2;default
completeness software
0.02
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR8439172 of study SRP178963.
description
aquatic
environmental medium
Atlantic Ocean
geographic location (country and/or sea)
37.29170000
DD
geographic location (latitude)
-32.27790000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
hydrothermal vent metagenome
isolation_source
hydrothermal vent biome
local environmental context
hydrothermal vent metagenome
metagenomic source
uncultured Caldithrix sp.
organism
Hydrothermal vent microbial communities from Mid Atlantic Ridge, Atlantic Ocean
project name
SAMN10350645
sample derived from
uncultured Caldithrix sp.
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP163575_co3_317
title