2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22431812
SRA accession
binchicken_co18_241
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
MEGAHIT;1.2.9;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
94.88
%
completeness score
CheckM2;1.0.2;default
completeness software
3.43
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12676968,SRR7053514 of study SRP284006.
description
aquatic
environmental medium
Canada
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
freshwater metagenome
isolation_source
freshwater biome
local environmental context
freshwater metagenome
metagenomic source
uncultured Draconibacterium sp.
organism
Boreal Shield lakes number in the millions globally, and an estimated 15% of these lakes develop anoxic waters seasonally. These anoxic waters commonly become ferruginous, with high levels of dissolved ferrous iron and low levels of sulfate and sulfide. Such ferruginous ecosystems have been poorly explored in a modern environmental context and are also relevant toward understanding early Earth ecosystems such as the anoxic and ferruginous oceans predicted during the Archaean Eon (approx. 3.8-2.5 billion years ago). Here we surveyed multiple Boreal Shield lakes at the International Institute for Sustainable Development Experimental Lakes Area (IISD-ELA near Kenora, Ontario, Canada), sampling a core set of eight seasonally anoxic lakes, a permanently oxic reference lake, and samples from other lakes obtained where possible. In this BioProject, metagenome, metatranscriptome, and 16S ribosomal RNA gene amplicon sequencing data are deposited for the 2017-2018 portion of the survey. Data from the 2016 portion of the survey are available under the Joint Genome Institute (JGI) Genome Portal under Proposal ID 502896. Note that this BioProject also contains a small number of 2016 samples (amplicon data only) that were re-sequenced due to failed sequencing in the 2016 run.
project name
SAMN16221752,SAMN08779082
sample derived from
uncultured Draconibacterium sp.
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co18_241
title