2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22459320
SRA accession
SRP135972_co2_87
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
engineered
broad-scale environmental context
not provided
collection date
98.59
%
completeness score
CheckM2;1.0.2;default
completeness software
2.98
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR6869054,SRR6869055 of study SRP135972.
description
engineered
environmental medium
not provided
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
biofilm metagenome
isolation_source
biofilm biome
local environmental context
biofilm metagenome
metagenomic source
uncultured Porphyrobacter sp.
organism
Microbes play important roles in biogeochemical cycling in the marine environment. Recent investigations through big data analyses have assess the global ocean microbial diversity. Planktonic microbes can adhere to surface to form structured communities called biofilms, yet whose specificity compared with the seed water communities have not been systematically evaluated.
project name
SAMN08714533
sample derived from
uncultured Porphyrobacter sp.
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP135972_co2_87
title