2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22459676
SRA accession
SRP239594_co1_171
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
aquatic
broad-scale environmental context
2011-03-25
collection date
90.81
%
completeness score
CheckM2;1.0.2;default
completeness software
0.74
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR10836660,SRR10836661 of study SRP239594.
description
aquatic
environmental medium
Pacific Ocean
geographic location (country and/or sea)
8.68
DD
geographic location (latitude)
-84.03
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine sediment metagenome
isolation_source
marine sediment biome
local environmental context
marine sediment metagenome
metagenomic source
uncultured Dehalococcoidia bacterium
organism
In this project, we reconstruct microbial genomes from the metagenome sequencing data from shallow sediments in core U1379B collected from the Costa Rica Margin during IODP Expedition 334. We used these data to discuss the diversity and potential metabolic functions of microbes especially a couple of novel benthic archaea in subduction zone sediments.
project name
SAMN13740709,SAMN13740703
sample derived from
uncultured Dehalococcoidia bacterium
scientific_name
NextSeq 500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP239594_co1_171
title