2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22430314
SRA accession
ERP113451_co2_86
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
90.73
%
completeness score
CheckM2;1.0.2;default
completeness software
1.6
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR3094287,ERR3094291 of study ERP113451.
description
aquatic
environmental medium
not provided
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
metagenome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
uncultured Muribaculaceae bacterium
organism
Total microbial communities were collected from an old gasworks site over a year (May 2016 - May 2017). Six sampling stations were studied. Fourteen total metagenomes, viromes and 16S rRNA gene amplicon datasets were generated using Illumina Sequencing. For details about this study, please refer to: Costeira R, Doherty R, Allen CCR, Larkin MJ, Kulakov LA. Analysis of viral and bacterial communities in groundwater associated with contaminated land. Sci Total Environ 2019 656:1413–26. doi:10.1016/j.scitotenv.2018.11.429.This work was supported by the European Union's Horizon 2020 - Research and Innovation Framework Programme under the Marie Sklodowska-Curie grant agree-ment No. 643087 REMEDIATE (Improved decision-making in contaminated land site investigation and risk assessment).
project name
SAMEA5243704,SAMEA5243708
sample derived from
uncultured Muribaculaceae bacterium
scientific_name
Illumina HiSeq 4000,Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: ERP113451_co2_86
title