2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22432069
SRA accession
binchicken_co202_61
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
aquatic
broad-scale environmental context
2011-11-08
collection date
96.11
%
completeness score
CheckM2;1.0.2;default
completeness software
1.92
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12068623,SRR5189788 of study SRP159621.
description
aquatic
environmental medium
Atlantic Ocean
geographic location (country and/or sea)
22.8
DD
geographic location (latitude)
-46.05
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine sediment metagenome
isolation_source
marine sediment biome
local environmental context
marine sediment metagenome
metagenomic source
uncultured Thalassospiraceae bacterium
organism
This project aims to understand the diversity and ecophysiology of microbes especially those involved in the nitrogen cycling in oligotrophic subseafloor sediments, by integrating geochemical measurements and modeling, amplicon sequencing, and quantification of functional genes.
project name
SAMN09979605,SAMN06240273
sample derived from
uncultured Thalassospiraceae bacterium
scientific_name
Illumina HiSeq 2500,Illumina HiSeq 1000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co202_61
title