2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22451060
SRA accession
binchicken_co272_8
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
engineered
broad-scale environmental context
2014-04-09
collection date
74.52
%
completeness score
CheckM2;1.0.2;default
completeness software
1.16
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR3987232,ERR3987276 of study ERP120310.
description
engineered
environmental medium
Germany
geographic location (country and/or sea)
54.18053
DD
geographic location (latitude)
12.08722
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
metagenome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
uncultured Lacinutrix sp.
organism
Microplastics (PE, PS) and wooden pellets were incubated for 2 weeks along an environmental gradient from the coastal Baltic Sea to a river estuary (Warnow, Germany). The resulting microbial biofilm communities were compared using metagenomics as well as metaproteomics. Taxonomic and functional differences were found according to station and sample type. Overall, the environmental conditions had a stronger impact on the biofilm communities than the substrates themselves. Within the plastic associated communities, neither polymer degradation nor pathogenicity processes did play a relevant role. Our study represents the first approach to analyse microplastic biofilms using meta-proteogenomics.
project name
SAMEA6617240,SAMEA6617244
sample derived from
uncultured Lacinutrix sp.
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co272_8
title