2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22356687
SRA accession
SRP144767_co2_61
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
host
broad-scale environmental context
not provided
collection date
66.55
%
completeness score
CheckM2;1.0.2;default
completeness software
1.56
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR7153373,SRR7153381 of study SRP144767.
description
host
environmental medium
Arctic Ocean
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
sponge metagenome
isolation_source
sponge biome
local environmental context
sponge metagenome
metagenomic source
uncultured Nitrospinaceae bacterium
organism
This dataset was collected during expedition PS101 of research vessel POLARSTERN to the Arctic Ocean in 2016. It includes amplicon raw sequence reads (V3V4 region 16S rRNA gene survey), metagenomes and metatranscriptomes of deep-sea sponge-associated and seawater microbes.
project name
SAMN09064953,SAMN09064976
sample derived from
uncultured Nitrospinaceae bacterium
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP144767_co2_61
title