2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22431623
SRA accession
binchicken_co181_41
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
91.21
%
completeness score
CheckM2;1.0.2;default
completeness software
2.18
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5459186,SRR5581655,SRR7526679,SRR8862235 of study SRP104306.
description
aquatic
environmental medium
Antarctica
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
salt lake metagenome
isolation_source
salt lake biome
local environmental context
salt lake metagenome
metagenomic source
uncultured Pelolinea sp.
organism
Seasonal variation in Antarctic microbial communities: ecology, stability and susceptibility to ecosystem change
project name
SAMN06267220,SAMN06343953,SAMN09201103,SAMN10864394
sample derived from
uncultured Pelolinea sp.
scientific_name
Illumina HiSeq 2500,Illumina HiSeq 2500,Illumina HiSeq 2500,Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co181_41
title