2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22363541
SRA accession
SRP271791_co2_64
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
engineered
broad-scale environmental context
2018-05
collection date
95.57
%
completeness score
CheckM2;1.0.2;default
completeness software
1.7
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12217121,SRR12217123 of study SRP271791.
description
engineered
environmental medium
Spain
geographic location (country and/or sea)
37.78
DD
geographic location (latitude)
-6.82
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
mine drainage metagenome
isolation_source
mine drainage biome
local environmental context
mine drainage metagenome
metagenomic source
uncultured Candidatus Saccharibacteria bacterium
organism
In this Project, started in 2017, we are carrying out a comprehensive study of the complex interactions taking place in aqueous acidic solutions between dissolved metals and microbial cells inhabiting deep anoxic zones. These interactions can lead to biomineral formation and affect to the geochemical behavior of many different trace metals. We are also trying to identify adaptive mechanisms by the acidophiles to cope with extremely high salinity and metal concentrations existing in these habitats, and their possible implications for geomicrobiology and biotechnology (e.g., biomining, bioleaching). The project is funded by the Spanish Ministry of Economy and Competitiveness through its National Program of Research, Development and Innovation. The main methods used are Scanning Transmission Electron Microscopy, Cryo-Electron Microscopy, High-Resolution Transmission Electron Microscopy, Metagenomics, Metatranscriptomic, Electron Energy-Loss Spectroscopy, Scanning Electron Microscopy with Energy Dispersive X-ray Spectroscopy, Bioreactors, Anaerobic Microbiology, Synchrotron X-Ray Diffraction, Biomolecular Analyses.
project name
SAMN15524494,SAMN15524492
sample derived from
uncultured Candidatus Saccharibacteria bacterium
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP271791_co2_64
title