2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22192848
SRA accession
SRP253650_co1_67
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
aquatic
broad-scale environmental context
2017-09-03
collection date
71.81
%
completeness score
CheckM2;1.0.2;default
completeness software
0.1
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11455656,SRR11455659 of study SRP253650.
description
aquatic
environmental medium
Atlantic Ocean
geographic location (country and/or sea)
43.8942
DD
geographic location (latitude)
-63.076
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine metagenome
isolation_source
marine biome
local environmental context
marine metagenome
metagenomic source
uncultured Cytophagales bacterium
organism
This dataset was collected during the expeditions 'Hudson2016-019', and 'MLB2017001' of the Canadian Coast Guard Ships (CCGS) Hudson and Martha L. Black in 2016 and 2017. It includes amplicon raw sequence reads (V3V4 region 16S rRNA gene survey) of seawater, sediment, biofilm and deep-sea sponge-associated microbes. The sponge species Vazella pourtalesii is covered.
project name
SAMN14422897,SAMN14422896
sample derived from
uncultured Cytophagales bacterium
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP253650_co1_67
title