2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22433058
SRA accession
binchicken_co246_370
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
71.74
%
completeness score
CheckM2;1.0.2;default
completeness software
1.67
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11235434,SRR8476370 of study SRP187139.
description
aquatic
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
activated sludge metagenome
isolation_source
activated sludge biome
local environmental context
activated sludge metagenome
metagenomic source
uncultured Methanoregula sp.
organism
ANTIRES investigates the occurrence and expression of antibiotic resistance genes (ARG) and antibiotic resistant microorganisms (ARM) in wastewater using state-of-the-art complementary meta-omics techniques. In order to identify distribution pathways of ARGs through polluted wastewater, samples of municipal wastewater are taken at seasonal intervals. The integration of microbiological and biochemical as well as metagenome, metatranscriptome and metaproteome analyses should provide information about the occurrence of antibiotics, ARMs and actually expressed ARGs. The results of these investigations will be used to establish an antibiotic resistance rapid test. The data and diagnostic tools collected in ANTIRES contribute to a better understanding of the distribution pathways and seasonal dynamics of antibiotic resistance in water bodies and are therefore essential for the development of strategies to contain this process.
project name
SAMN14069892,SAMN10351349
sample derived from
uncultured Methanoregula sp.
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co246_370
title