2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22451258
SRA accession
binchicken_co293_283
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
engineered
broad-scale environmental context
not provided
collection date
89.16
%
completeness score
CheckM2;1.0.2;default
completeness software
4.33
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR2094175,SRR7080638 of study ERP024470.
description
engineered
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
seawater metagenome
isolation_source
seawater biome
local environmental context
seawater metagenome
metagenomic source
uncultured Comamonadaceae bacterium
organism
In this study, the antibiotic resistance genes (ARGs) profiles and the microbial community structure of the two typical aquacultures farms were studied by metagenomics approach. Based on the blast results upon structured ARDB, 50 ARGs subtypes belonging to 21 ARGs types were identiﬁed in the two farms.
project name
SAMEA104210112,SAMN08777771
sample derived from
uncultured Comamonadaceae bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co293_283
title