2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22460608
SRA accession
binchicken_co275_193
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
88.36
%
completeness score
CheckM2;1.0.2;default
completeness software
2.17
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR2834521,SRR371318 of study ERP111362.
description
aquatic
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
hydrothermal vent metagenome
isolation_source
hydrothermal vent biome
local environmental context
hydrothermal vent metagenome
metagenomic source
uncultured Pseudomonadales bacterium
organism
Metagenome studies of the Kallisti Limnes, carbon dioxide-accumulating subsea pools
project name
SAMEA4964529,SAMN00708975
sample derived from
uncultured Pseudomonadales bacterium
scientific_name
Illumina MiSeq,Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co275_193
title