2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22458635
SRA accession
binchicken_co332_136
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
83.17
%
completeness score
CheckM2;1.0.2;default
completeness software
2.63
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR6481098,SRR7801941 of study SRP130152.
description
aquatic
environmental medium
Canada
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
freshwater metagenome
isolation_source
freshwater biome
local environmental context
freshwater metagenome
metagenomic source
uncultured Halobacteria archaeon
organism
Generating metagenome shotgun data for reconstructing uncultured bacterial and archaeal genomes for further understanding of microbial metabolism as well as evolutionary processes
project name
SAMN06269228,SAMN09988990
sample derived from
uncultured Halobacteria archaeon
scientific_name
Illumina HiSeq 2500,Illumina MiSeq
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co332_136
title