2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22458044
SRA accession
SRP231805_co4_135
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
MEGAHIT;1.2.9;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
aquatic
broad-scale environmental context
2015-08-17
collection date
94.25
%
completeness score
CheckM2;1.0.2;default
completeness software
0.08
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR10519663,SRR5216256 of study SRP231805.
description
aquatic
environmental medium
USA
geographic location (country and/or sea)
37.4127
DD
geographic location (latitude)
-118.504
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
hot springs metagenome
isolation_source
hot springs biome
local environmental context
hot springs metagenome
metagenomic source
uncultured Candidatus Saccharibacteria bacterium
organism
Sequencing as part of the Microbial Dark Matter project phase II project
project name
SAMN06264355,SAMN06266020
sample derived from
uncultured Candidatus Saccharibacteria bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP231805_co4_135
title