2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22456408
SRA accession
binchicken_co175_593
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
69.9
%
completeness score
CheckM2;1.0.2;default
completeness software
3.69
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8437820,SRR8942307 of study SRP178833.
description
aquatic
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
riverine metagenome
isolation_source
riverine biome
local environmental context
riverine metagenome
metagenomic source
uncultured Synechococcus sp.
organism
Freshwater microbial communities from St. Lawrence River, New York, United States river dissolved organic matter (DOM) added 8d time point
project name
SAMN10351021,SAMN11312053
sample derived from
uncultured Synechococcus sp.
scientific_name
Illumina HiSeq 2500,Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co175_593
title