2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22451727
SRA accession
binchicken_co353_18
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
host
broad-scale environmental context
not provided
collection date
87.47
%
completeness score
CheckM2;1.0.2;default
completeness software
4.51
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12021142,SRR12021149 of study SRP267455.
description
host
environmental medium
China
geographic location (country and/or sea)
32.3
DD
geographic location (latitude)
120.1
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
metagenome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
uncultured Lachnospiraceae bacterium
organism
we investigate the fluctuations of rumen microbiota taxa and the corresponding gene abundances for carbohydrate metabolism and ARGs distribution during SARA in dairy cattle. This was obtained with a metagenomics analysis using SARA cows induced by high grain diets.
project name
SAMN15235754,SAMN15235748
sample derived from
uncultured Lachnospiraceae bacterium
scientific_name
HiSeq X Ten
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co353_18
title