2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22451598
SRA accession
binchicken_co32_401
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
aquatic
broad-scale environmental context
2017-07
collection date
80.03
%
completeness score
CheckM2;1.0.2;default
completeness software
3.64
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR9330139,SRR9330141 of study SRP201947.
description
aquatic
environmental medium
China
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
soda lake metagenome
isolation_source
soda lake biome
local environmental context
soda lake metagenome
metagenomic source
uncultured Thermoplasmata archaeon
organism
Soda lake samples from Habor Lake and Hutong Qagan Lake (Inner Mongolia Autonomous Region, China) were collected and performed NGS sequencing to investigate the microbial community and uncultured functional microbes involved in carbon and sulfur cycle.
project name
SAMN12097871,SAMN12097873
sample derived from
uncultured Thermoplasmata archaeon
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co32_401
title