2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22450410
SRA accession
binchicken_co118_60
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
engineered
broad-scale environmental context
not provided
collection date
86.91
%
completeness score
CheckM2;1.0.2;default
completeness software
3.92
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR10035881,SRR10035882 of study SRP219636.
description
engineered
environmental medium
China
geographic location (country and/or sea)
22.38
DD
geographic location (latitude)
114.05
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
activated sludge metagenome
isolation_source
activated sludge biome
local environmental context
activated sludge metagenome
metagenomic source
uncultured Bifidobacterium sp.
organism
Biotic interactions are prime parameters affecting the long-term bacterial community assemblage in activated sludge of municipal wastewater treatment plants
project name
SAMN12650276,SAMN12650275
sample derived from
uncultured Bifidobacterium sp.
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co118_60
title