2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22452026
SRA accession
binchicken_co77_3
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2019-07-10
collection date
78.38
%
completeness score
CheckM2;1.0.2;default
completeness software
4.29
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12088346,SRR12088347 of study SRP268746.
description
aquatic
environmental medium
Spain
geographic location (country and/or sea)
40.546053
DD
geographic location (latitude)
-2.050427
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
lake water metagenome
isolation_source
lake water biome
local environmental context
lake water metagenome
metagenomic source
uncultured Syntrophaceae bacterium
organism
The case study is focused on the crenogenic meromictic Lake El Tobar (Spain), a continental karstified system formed by the sink and solution of a combination of Cretaceous dolomites and Triassic salt-rich Keuper. One of the peculiarities of this system is the formation of a salinity gradient from 0.6 to > 200 mS cm-1, that generates an anoxic saline monimolimnion starting at 13-14 m and reaching the bottom at 18 m of depth. Samples were obtained from 2, 12, 12.5, 13, 13.5, 14, integrated 15.5-16.5 and 18 m of depth to study the microbial vertical zoning and stratification patterns of the lake. Water samples were filtered through a series of 20, 5 and 0.22 micron filters. The 0.22 micron filters were sequenced with high-throughput Shotgun sequencing. We provide 8 metagenomic datasets and MAGs derived from these samples.
project name
SAMN15249361,SAMN15249360
sample derived from
uncultured Syntrophaceae bacterium
scientific_name
HiSeq X Ten
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co77_3
title