2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22459595
SRA accession
SRP167436_co1_350
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
engineered
broad-scale environmental context
not provided
collection date
84.43
%
completeness score
CheckM2;1.0.2;default
completeness software
1.99
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8165484,SRR8165485 of study SRP167436.
description
engineered
environmental medium
Canada
geographic location (country and/or sea)
43.65
DD
geographic location (latitude)
-79.38
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
anaerobic digester metagenome
isolation_source
anaerobic digester biome
local environmental context
anaerobic digester metagenome
metagenomic source
uncultured Methanospirillum sp.
organism
Characterization of the microbial community from a novel sequentially fed anaerobic waste digestor treating solid organic waste. Laboratory scale experiment operated at the University of Toronto.
project name
SAMN10349522,SAMN10349523
sample derived from
uncultured Methanospirillum sp.
scientific_name
NextSeq 500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP167436_co1_350
title