2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22458978
SRA accession
binchicken_co365_232
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
host
broad-scale environmental context
not provided
collection date
69.19
%
completeness score
CheckM2;1.0.2;default
completeness software
2.11
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR14474050,SRR16327204 of study SRP319028.
description
host
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
feces metagenome
isolation_source
feces biome
local environmental context
feces metagenome
metagenomic source
uncultured Clostridium sp.
organism
Analyze the bacteria and antibiotic resistance gene in pig fecal in China
project name
SAMN19078918,SAMN22262119
sample derived from
uncultured Clostridium sp.
scientific_name
Illumina NovaSeq 6000,HiSeq X Ten
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co365_232
title