2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22452235
SRA accession
binchicken_co89_639
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
terrestrial
broad-scale environmental context
2016-06-09
collection date
88.72
%
completeness score
CheckM2;1.0.2;default
completeness software
1.7
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR9700688,SRR9706179 of study SRP215073.
description
terrestrial
environmental medium
USA
geographic location (country and/or sea)
42.722
DD
geographic location (latitude)
-70.847
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
salt marsh metagenome
isolation_source
salt marsh biome
local environmental context
salt marsh metagenome
metagenomic source
uncultured Spirochaetota bacterium
organism
Salt marsh sediment microbial communities from the Plum Island Ecosystem Long term ecological research (LTER), Massachusetts, United States
project name
SAMN11532780,SAMN11532413
sample derived from
uncultured Spirochaetota bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co89_639
title