2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22459440
SRA accession
SRP241326_co4_268
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
engineered
broad-scale environmental context
not provided
collection date
97.22
%
completeness score
CheckM2;1.0.2;default
completeness software
2.85
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR10872652,SRR10872663 of study SRP241335.
description
engineered
environmental medium
Netherlands
geographic location (country and/or sea)
51.9691
DD
geographic location (latitude)
5.6654
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
sludge metagenome
isolation_source
sludge biome
local environmental context
sludge metagenome
metagenomic source
uncultured Syntrophomonadaceae bacterium
organism
Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands methanogenic biofilm granules formed in a bioreactor working under low (5 g/L Na+) salinity conditions
project name
SAMN12796019,SAMN12796081
sample derived from
uncultured Syntrophomonadaceae bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP241326_co4_268
title