2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22449813
SRA accession
SRP334346_co1_66
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
engineered
broad-scale environmental context
2020-06
collection date
96.24
%
completeness score
CheckM2;1.0.2;default
completeness software
1.24
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR15635848,SRR15635857 of study SRP334346.
description
engineered
environmental medium
China
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
aquaculture metagenome
isolation_source
aquaculture biome
local environmental context
aquaculture metagenome
metagenomic source
uncultured Gammaproteobacteria bacterium
organism
These findings may greatly increase our understanding of the microbiota characteristics of the shrimp biofloc based aquaculture system and the complex interactions among shrimp, ambient microflora, and environmental variables. It provides a reference basis for policy on breeding environment safety and maintaining food safety in the production of Penaeus monodon.
project name
SAMN21013339,SAMN21013338
sample derived from
uncultured Gammaproteobacteria bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP334346_co1_66
title