2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22453635
SRA accession
binchicken_co215_37
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
92.36
%
completeness score
CheckM2;1.0.2;default
completeness software
0.58
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR2604108,ERR599318 of study ERP108950.
description
aquatic
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
seawater metagenome
isolation_source
seawater biome
local environmental context
seawater metagenome
metagenomic source
uncultured Gammaproteobacteria bacterium
organism
The dataset includes 40 surface seawater (3m) metagenomics samples collected monthly from January 2012 to February 2015 at the SOLA station in the Bay of Banyuls sur Mer (France) in the northwestern Mediterranean.Samples were prefiltered on 3 μm filters and collected on 0.22 μm filters. Paired-end reads (2x100pb) sequencing was done with an Illumina HiSeq 2500.
project name
SAMEA4699814,SAMEA2620959
sample derived from
uncultured Gammaproteobacteria bacterium
scientific_name
Illumina HiSeq 2500,Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co215_37
title