2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22453566
SRA accession
binchicken_co48_451
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
91.56
%
completeness score
CheckM2;1.0.2;default
completeness software
2.33
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11826814,SRR5506693 of study SRP262660.
description
aquatic
environmental medium
Pacific Ocean
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
seawater metagenome
isolation_source
seawater biome
local environmental context
seawater metagenome
metagenomic source
uncultured Hyphomicrobiales bacterium
organism
Seawater microbial communities from eastern tropical North Pacific Ocean
project name
SAMN14515069,SAMN06344165
sample derived from
uncultured Hyphomicrobiales bacterium
scientific_name
Illumina NovaSeq 6000,Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co48_451
title