2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22460176
SRA accession
SRP136066_co1_116
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
terrestrial
broad-scale environmental context
2014-10-22
collection date
80.43
%
completeness score
CheckM2;1.0.2;default
completeness software
5.65
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR6868922,SRR6868923 of study SRP136066.
description
terrestrial
environmental medium
USA
geographic location (country and/or sea)
63.905016
DD
geographic location (latitude)
-145.554566
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
permafrost metagenome
isolation_source
permafrost biome
local environmental context
permafrost metagenome
metagenomic source
uncultured Gemmatimonadaceae bacterium
organism
This study is examining soil communities across a Holocene chronosequence to investigate how climate and changing ecosystems across the holocene altered the soil community
project name
SAMN08731982
sample derived from
uncultured Gemmatimonadaceae bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP136066_co1_116
title