2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22456096
SRA accession
binchicken_co289_90
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
VAMB;3.0.2;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
75.45
%
completeness score
CheckM2;1.0.2;default
completeness software
3.2
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs DRR083415,SRR5788130 of study DRP005676.
description
aquatic
environmental medium
not applicable
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine metagenome
isolation_source
marine biome
local environmental context
marine metagenome
metagenomic source
uncultured Hyphomicrobiales bacterium
organism
In the present study, with the aim of understanding the effects of the gigantic earthquake and its resulting tsunami in Tohoku area on marine biodiversity and ecosystem, we develop a meta-genomic method of observing a variety of marine microorganisms at once and its practical application to environmental monitoring. Utilizing the methods developed, we make assessment of marine environments by comparing the diversity of microorganisms in spots along the sea coasts between Tohoku area and other areas. The outcome of the present study is expected to make contributions to deeper understanding of marine ecosystem of microorganisms.
project name
SAMD00070667,SAMN07136910
sample derived from
uncultured Hyphomicrobiales bacterium
scientific_name
Illumina HiSeq 2500,NextSeq 550
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co289_90
title