2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22450716
SRA accession
binchicken_co143_2
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
MEGAHIT;1.2.9;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
host
broad-scale environmental context
not provided
collection date
99.23
%
completeness score
CheckM2;1.0.2;default
completeness software
0.03
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12008128,SRR12008134 of study SRP267189.
description
host
environmental medium
Pacific Ocean
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
mollusc metagenome
isolation_source
mollusc biome
local environmental context
mollusc metagenome
metagenomic source
uncultured bacterium
organism
Sequencing data and genome assemblies of gammaproteobacterial symbionts and mitochondria from chemosynthetic bivalve hosts from families Mytilidae, Solemyidae, and Vesicomyidae.
project name
SAMN15032104,SAMN15032098
sample derived from
uncultured bacterium
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co143_2
title