2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22450631
SRA accession
binchicken_co13_436
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
terrestrial
broad-scale environmental context
2014-07-11
collection date
89.61
%
completeness score
CheckM2;1.0.2;default
completeness software
1.71
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5468419,SRR6056297 of study SRP104921.
description
terrestrial
environmental medium
USA
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
-122.1331
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
soil metagenome
isolation_source
soil biome
local environmental context
soil metagenome
metagenomic source
uncultured Pirellulaceae bacterium
organism
Microbial community dynamics and restoration in a former industrial salt pond
project name
SAMN06266228,SAMN07631159
sample derived from
uncultured Pirellulaceae bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co13_436
title