2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22459030
SRA accession
binchicken_co85_35
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
aquatic
broad-scale environmental context
2014-07-22
collection date
85.49
%
completeness score
CheckM2;1.0.2;default
completeness software
3.27
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8799000,SRR8799001 of study SRP189655.
description
aquatic
environmental medium
Atlantic Ocean
geographic location (country and/or sea)
72.0
DD
geographic location (latitude)
0.1
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine sediment metagenome
isolation_source
marine sediment biome
local environmental context
marine sediment metagenome
metagenomic source
uncultured Dehalococcoidia bacterium
organism
This project was undertaken to understand the identities, metabolic functions, and physiological states of microbial life in the marine sediments of mesopelagic depths on the flanks of the Arctic Mid-Ocean Ridge.
project name
SAMN11268106,SAMN11268109
sample derived from
uncultured Dehalococcoidia bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co85_35
title