2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22460451
SRA accession
binchicken_co261_17
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
aquatic
broad-scale environmental context
2015
collection date
81.53
%
completeness score
CheckM2;1.0.2;default
completeness software
1.6
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR1527285,ERR1527286 of study ERP016382.
description
aquatic
environmental medium
Australia
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
metagenome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
uncultured Verrucomicrobiota bacterium
organism
Data being used to reconstruct genomes. Please contact prior use until work is published. During the 1960s, assorted radioactive waste was disposed at the Little Forest Legacy Site near Sydney (Australia). Trenches were dug and filled with waste. It has been observed that after rainfall events, water overflows. The study aims to evaluate the potential community changes and relate them with expected fluctuating redox conditions.
project name
SAMEA4074291
sample derived from
uncultured Verrucomicrobiota bacterium
scientific_name
NextSeq 500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co261_17
title