2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22458522
SRA accession
SRP098346_co1_268
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
aquatic
broad-scale environmental context
2015-03-14
collection date
90.04
%
completeness score
CheckM2;1.0.2;default
completeness software
1.09
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5214703,SRR5214704 of study SRP098346.
description
aquatic
environmental medium
Rwanda
geographic location (country and/or sea)
-2.0288
DD
geographic location (latitude)
29.1756
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
freshwater metagenome
isolation_source
freshwater biome
local environmental context
freshwater metagenome
metagenomic source
uncultured Candidatus Saccharibacteria bacterium
organism
Microbial Dark Matter project phase II - Metagenome sequencing of Anoxic lake water microbial communities
project name
SAMN06266182,SAMN06264666
sample derived from
uncultured Candidatus Saccharibacteria bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP098346_co1_268
title