2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22449834
SRA accession
SRP335695_co1_127
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
host
broad-scale environmental context
2019
collection date
92.42
%
completeness score
CheckM2;1.0.2;default
completeness software
2.68
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR15721657,SRR15721659 of study SRP335695.
description
host
environmental medium
China
geographic location (country and/or sea)
22.15
DD
geographic location (latitude)
114.33
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
gut metagenome
isolation_source
gut biome
local environmental context
gut metagenome
metagenomic source
uncultured Methanomicrobiales archaeon
organism
Hawksbills and green turtles have been already vulnerable species, so it is imperative to explore these factors affecting health of sea turtles. The gut microbiota is closely linked to host nutrition, immunity and health. In the study metagenomic analysis was used to reveal taxonomic and functional diversity of gut communities from the hawksbills and green sea turtles.
project name
SAMN21235232,SAMN21235230
sample derived from
uncultured Methanomicrobiales archaeon
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP335695_co1_127
title