2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22456454
SRA accession
binchicken_co29_1
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MaxBin2;2.2.7;default
binning software
aquatic
broad-scale environmental context
2016-11-28
collection date
81.95
%
completeness score
CheckM2;1.0.2;default
completeness software
6.39
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR7067318,SRR7067327 of study SRP142694.
description
aquatic
environmental medium
Sweden
geographic location (country and/or sea)
57.4344
DD
geographic location (latitude)
16.66
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
groundwater metagenome
isolation_source
groundwater biome
local environmental context
groundwater metagenome
metagenomic source
uncultured Thermodesulfobacteriota bacterium
organism
Sorted cells from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden
project name
SAMN08778289,SAMN08776847
sample derived from
uncultured Thermodesulfobacteriota bacterium
scientific_name
NextSeq 500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co29_1
title