2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22457765
SRA accession
SRP124364_co1_94
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
2014-10-31
collection date
79.62
%
completeness score
CheckM2;1.0.2;default
completeness software
0.89
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR6262237,SRR6262238 of study SRP124364.
description
aquatic
environmental medium
China
geographic location (country and/or sea)
24.82
DD
geographic location (latitude)
118.16
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
freshwater metagenome
isolation_source
freshwater biome
local environmental context
freshwater metagenome
metagenomic source
uncultured Rhizobium sp.
organism
Metagenome data from freshwater of Xidong Reservoir
project name
SAMN07961457,SAMN07961456
sample derived from
uncultured Rhizobium sp.
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP124364_co1_94
title