2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22457913
SRA accession
SRP128246_co1_339
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
terrestrial
broad-scale environmental context
not provided
collection date
92.44
%
completeness score
CheckM2;1.0.2;default
completeness software
5.28
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR6448209,SRR6831528 of study SRP128250.
description
terrestrial
environmental medium
Antarctica
geographic location (country and/or sea)
-77.5281
DD
geographic location (latitude)
161.59
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
microbial mat metagenome
isolation_source
microbial mat biome
local environmental context
microbial mat metagenome
metagenomic source
uncultured Pleurocapsa sp.
organism
Metagenomic sequencing from O2-super saturated mats to sample a suite of novel Melainabacteria OTUs
project name
SAMN06269051,SAMN06269047
sample derived from
uncultured Pleurocapsa sp.
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP128246_co1_339
title