2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22458454
SRA accession
binchicken_co397_10
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
host
broad-scale environmental context
not provided
collection date
90.61
%
completeness score
CheckM2;1.0.2;default
completeness software
0.9
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR2391705,ERR2391738 of study ERP107285.
description
host
environmental medium
Italy
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
ciliate metagenome
isolation_source
ciliate biome
local environmental context
ciliate metagenome
metagenomic source
uncultured Pseudomonadota bacterium
organism
Metagenomic sequencing of Kentrophoros spp., a genus of ciliates from marine sediments with sulfur-oxidizing bacterial symbionts. The aim of this study is to bin and annotate genomes of the associated symbionts to understand their metabolic functions and the role that they play for their hosts.
project name
SAMEA104679832,SAMEA104679840
sample derived from
uncultured Pseudomonadota bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co397_10
title