2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22457603
SRA accession
SRP124282_co10_130
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
aquatic
broad-scale environmental context
2016-06
collection date
76.23
%
completeness score
CheckM2;1.0.2;default
completeness software
1.34
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR6943131,SRR6943132 of study SRP124282.
description
aquatic
environmental medium
Italy
geographic location (country and/or sea)
46.2
DD
geographic location (latitude)
10.52
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
groundwater metagenome
isolation_source
groundwater biome
local environmental context
groundwater metagenome
metagenomic source
uncultured Candidatus Saccharibacteria bacterium
organism
Whole shotgun metagenome from a therapeutic thermal spring water, extracted after filtration (at 0.22 um) from filters.
project name
SAMN07808854,SAMN07808853
sample derived from
uncultured Candidatus Saccharibacteria bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP124282_co10_130
title