2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22460237
SRA accession
binchicken_co120_13
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
terrestrial
broad-scale environmental context
not provided
collection date
72.0
%
completeness score
CheckM2;1.0.2;default
completeness software
3.48
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR9649758,SRR9649759 of study SRP213361.
description
terrestrial
environmental medium
Atlantic Ocean
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
sediment metagenome
isolation_source
sediment biome
local environmental context
sediment metagenome
metagenomic source
uncultured Anaerolineaceae bacterium
organism
We intended to examine the response of microbial communities to the natural hydrocarbon seepages in sediments of Gulf of Mexico, through both gene-centric and genome-centric analysis of metagenomic sequencing data.
project name
SAMN12227486,SAMN12227487
sample derived from
uncultured Anaerolineaceae bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co120_13
title