2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22453356
SRA accession
SRP107338_co1_193
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT;2.15;default
binning software
engineered
broad-scale environmental context
not provided
collection date
81.78
%
completeness score
CheckM2;1.0.2;default
completeness software
0.01
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5576004,SRR5576005 of study SRP107338.
description
engineered
environmental medium
USA
geographic location (country and/or sea)
42.06
DD
geographic location (latitude)
-87.68
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
bioreactor metagenome
isolation_source
bioreactor biome
local environmental context
bioreactor metagenome
metagenomic source
uncultured Gammaproteobacteria bacterium
organism
This project focus on a Denitrifying Candidatus Accumulibacter enrichment culture that we’ve shown to be capable of producing substantial nitrous oxide when nitrite is present as the electron acceptor for denitrification. Shotgun metagenomic sequencing and genome-resolved metagenome analysis were applied to investigate the genomic nitrogen transformation potential for two Accumulibacter genomes as well as flanking bacterial genomes.
project name
SAMN06957055,SAMN06957054
sample derived from
uncultured Gammaproteobacteria bacterium
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP107338_co1_193
title