2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22452522
SRA accession
SRP118108_co4_386
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
SemiBin2;2.0.2;default
binning software
aquatic
broad-scale environmental context
2015-05-27
collection date
77.91
%
completeness score
CheckM2;1.0.2;default
completeness software
1.19
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR6051236,SRR6051411 of study SRP118130.
description
aquatic
environmental medium
USA
geographic location (country and/or sea)
38.9383
DD
geographic location (latitude)
-110.1342
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
aquifer metagenome
isolation_source
aquifer biome
local environmental context
aquifer metagenome
metagenomic source
uncultured Flavobacteriales bacterium
organism
High-throughput recovery of microbial communities from aquifer samples in Utah, USA
project name
SAMN07631071,SAMN07631073
sample derived from
uncultured Flavobacteriales bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRP118108_co4_386
title