2024-12-11
ENA first public
ERC000047
ENA-CHECKLIST
CMR
INSDC center name
public
INSDC status
ERS22451218
SRA accession
binchicken_co290_4
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.15.4;default
assembly software
coverage and kmer
binning parameters
MetaBAT2;2.15;default
binning software
aquatic
broad-scale environmental context
not provided
collection date
100
%
completeness score
CheckM2;1.0.2;default
completeness software
0.02
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR10521833,SRR9178121 of study SRP232737.
description
aquatic
environmental medium
Pacific Ocean
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine plankton metagenome
isolation_source
marine plankton biome
local environmental context
marine plankton metagenome
metagenomic source
uncultured Hyphomonas sp.
organism
Comparative viral community genome analysis in the Subarctic Pacific Ocean
project name
SAMN09091883,SAMN11874828
sample derived from
uncultured Hyphomonas sp.
scientific_name
Illumina HiSeq 2500,NextSeq 500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: binchicken_co290_4
title