SAMN08574225
External Id
California Institute of Technology
INSDC center name
2018-06-01T00:00:00Z
INSDC first public
2024-12-13T21:06:21.611Z
INSDC last update
SRS3230668
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
SRS3230668
SRA accession
medium quality draft
assembly quality
SPAdes
assembly software
kmer
bin_parameters
VizBin
binning software
2006-04-21
collection date
71.39
completeness score
checkm
completeness software
6.15
contamination score
ocean floor
env biome
mud volcano
env feature
sediment
env_material
true
environmental sample
Atlantic Ocean:Gulf of Cadiz
geo loc name
AAA252-L18
isolate
Gulf of Cadiz mud volcano
isolation source
35.56172 N 9.50721 W
lat lon
marine sediment metagenome
metagenome source
true
metagenomic
This is a coassembly of the single cells in SAMEA3112107, SAMEA3112100, SAMEA3112099, SAMEA3112098, SAMEA3112097, SAMEA3112096, SAMEA3112106, SAMEA3112105, SAMEA3112102, SAMEA3112101, SAMEA3112104, SAMEA3112103
note
This BioSample is a metagenomic assembly obtained from the publically available marine sediment metagenome raw reads : ERR668984,ERR668985,ERR668986,ERR668987, ERR668988,ERR668989,ERR668990,ERR668991,ERR668992,ERR668993,ERR668994, and ERR668995
note
Candidatus Methanophagaceae archaeon SCGC AAA252-L18
http://purl.obolibrary.org/obo/NCBITaxon_1046934
organism
metagenome assembled genome
sample type
multi marker approach
taxa_id
Microbe sample from Candidatus Methanophagaceae archaeon SCGC AAA252-L18
title