SAMN06027572
External Id
University of Queensland
INSDC center name
2016-11-16T00:00:00Z
INSDC first public
2024-12-13T21:06:21.355Z
INSDC last update
SRS1809139
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
Microbe.1.0
NCBI submission package
SRS1809139
SRA accession
CLC de novo assembler
assembly method
4.4.1
assembly_method_version
89.49%
completeness_estimated
3.27%
http://www.ebi.ac.uk/efo/EFO_0006467
contamination_estimated
Uncultivated genome recovered from an assembly of the SRX559946 metagenome.
description
TRUE
environmental sample
64.92
genome coverage
USA: Coal Oil Point, Santa Barbara, California
geo loc name
UBA203
isolate
Oil polluted marine water
isolation-source
BWA (BWA-MEM)
mapping_method
0.7.12-r1039
mapping_method_version
marine metagenome
metagenome source
TRUE
metagenomic
Candidatus Methanogaster sp. UBA203
http://purl.obolibrary.org/obo/NCBITaxon_1915703
organism
CheckM
quality_assessment_method
1.0.6
quality_assessment_method_version
metagenomic assembly
sample type
Genome binned from sequencing reads available in SRX559946
subsrc_note
Uncultivated Methanosarcinales archaeon UBA203 genome recovered from SRX559946
title