yes
16S recovered
Anvi'o v6.0 (using Prokka v1.14.3)
16S recovery software
SAMN13287923
External Id
GNS Science
INSDC center name
2020-05-01T00:00:00Z
INSDC first public
2024-12-13T21:06:21.848Z
INSDC last update
live
INSDC status
MIMAG.water
NCBI submission model
MIMAG.water.6.0
NCBI submission package
ERS22579875
SRA accession
metagenome-assembled genome
analysis project type
Medium
http://purl.obolibrary.org/obo/NCIT_C48164
assembly quality
Megahit v.1.1.13
assembly software
kmer+coverage
bin parameters
Anvi'o v6.0 (using CONCOCT v1.1.0)
binning software
2018/2019
collection date
88.1578947368421
completeness score
Anvi'o v6.0
completeness software
1.31578947368421
contamination score
11065
contig L50
Anvi'o v6.0
decontamination software
0-25cm
http://purl.obolibrary.org/obo/UO_0000015
depth
This BioSample is a metagenomic assembly obtained from the marine sediment metagenome BioSamples: SAMN12673430,SAMN12673432,SAMN12673436,SAMN12673456, SAMN12673457, and SAMN12673458
derived-from
Keywords: GSC:MIxS;MIMAG:6.0
description
-1974m
http://www.ebi.ac.uk/efo/EFO_0006768
elev
marine cold seep biome [ENVO:01000127] | marine bathyal zone biome [ENVO:01000026] | marine benthic biome [ENVO:01000024]
env_broad_scale
cold seep [ENVO:01000263] | marine cold seep biome [ENVO:01000127] |
env_local_scale
marine sediment [ENVO:03000033]
env_medium
1
environmental sample
New Zealand: Hikurangi Margin
geo loc name
GLR107
isolate
Glendhu Ridge methane seep
isolation source
41.77033333 S 176.0835 E
lat lon
marine sediment metagenome
metagenome source
1
metagenomic
Metagenome-assembled genome from metagenomes SRR10375097-9 and SRR10097245-7
note
248
number of contigs
Candidatus Methanophagales archaeon
http://purl.obolibrary.org/obo/NCBITaxon_2056316
organism
no
reassembly post binning
0.331235002492616
relative coverage Anaerobic (SRR10097246)
0.0450950894962028
relative coverage Anoxic (SRR10375098)
0.62366990801118
relative coverage Infiltration (SRR10097247)
0
relative coverage Low pH (SRR10097245)
0
relative coverage Oxic (SRR10375099)
0
relative coverage Reference (SRR10375097)
metagenomic assembly
sample-type
multi-marker approach (GTDBTk)
taxa id
Metagenome-assembled genome GLR107
title
2125356
total assembly size