2024-12-17
ENA first public
ERC000050
ENA-CHECKLIST
UdS
INSDC center name
public
INSDC status
ERS22583095
SRA accession
Green_N.bin.3
Submitter Id
metaSPAdes;3.15.4;-k21,33,55 --only-assembler, default parameters otherwise, MEGAHIT;1.2.9;default parameters, run on reads not assembled by metaSPAdes
assembly software
Metabat: --metabat_len=1000, Maxbin: -markerset=107, -min_contig_length=1000, CONCOCT: -l 1000
binning parameters
MetaBAT:2.12.1,CONCOCT:1.1.0,MaxBin:2.2.4,MetaWRAP_bin_refinement:1.135
binning software
Terrestrial biome
broad-scale environmental context
2021-09
collection date
68.8
%
completeness score
CheckM:1.0.150
completeness software
0.00
%
contamination score
Assembled from boreal moss metagenome (coassembly)
description
Soil
environmental medium
Canada
geographic location (country and/or sea)
51.7040721
DD
geographic location (latitude)
76.0521982
DD
geographic location (longitude)
Bryophytes in the boreal forest
isolation_source
Vegetation layer
local environmental context
moss metagenome
metagenomic source
uncultured Verrucomicrobiota bacterium
organism
Boreal moss-microbe interactions are revealed through metagenome assembly of novel bacterial species
project name
ERS20302207
sample derived from
uncultured Verrucomicrobiota bacterium
scientific_name
Green_N.bin.3 metagenome-assembled genome
title