2024-12-19
ENA first public
ERC000021
ENA-CHECKLIST
UniBremen
INSDC center name
public
INSDC status
ERS22629754
SRA accession
13ADH.10
Submitter Id
shallow marine sediment [ENVO:03000034] | polar biom [ENVO:01000339] | glacial retreat [ENVO:01001656] | coast [ENVO:01000687]
broad-scale environmental context
acetate, hydrogencarbonate, hydrogen, sulfate
chem_administration
2019-01-31
collection date
0 - 0.1
m
depth
Potter Cove sediment slurry SIP incubation with 13C labeled acetate, unlabeled hydrogencarbonate, hydrogen, sulfate, at 2 degree Celsius, density separated RNA light fraction (= gradient position 4), sediment from station 14, pooled cores STA14.03 and STA14.04 depth 0-10 cm, Potter Cove, Antarctica; parameters geographic location, depth and collection date  refer to sediment used to prepare the slurry; parameter original_fraction refers to fraction number of total fractions; for more information about slurry sample refer to BioSample submitted under accession number given under source_mat_ID
description
-42
m
elevation
microbial community [PCO:1000004] | mesocosm [ENVO:01000620]
environmental medium
different substrate additions | RNA stable isotope probing | labelling [EFO:0000562] | electron donor [CHEBI:15022]
experimental factor
Antarctica
geographic location (country and/or sea)
-62.2318889
DD
geographic location (latitude)
-58.6685
DD
geographic location (longitude)
King George Island/Isla 25 de Mayo, Potter Cove
geographic location (region and locality)
1.80128069
g/mL
gradient_pos_density
0.10775148223491
gradient_pos_rel_amt
4
gradient_position
10.1007/978-1-4939-9721-3_15
internal_standard
13C
isotope
175
isotopolog
single
isotopolog_approach
0.99
isotopolog_atom_frac
1S/C2H4O2.Na/c1-2(3)4;/h1H3,(H,3,4);/q;+1/p-1/i1+1,2+1;
isotopolog_atom_pos
30.026
ppm
isotopolog_dose
T456:00
hour
isotopolog_incu_time
isotopically labelled
isotopolog_label
anaerobic sediment [ENVO:00002045]
local environmental context
marine sediment metagenome
organism
10/14
original_fraction
Bacterial 16S rRNA community in sulfate-reducing stable isotope probing slurry incubation experiment testing different electron donors with sediment of Potter Cove
project name
anaerobe
relationship to oxygen
NA
replicate_experiment
marine sediment metagenome
scientific_name
10.1007/978-1-4939-9721-3_15
sip_method
13ADH
source_mat_alias
ERS22629541
source_mat_id
Potter Cove sediment slurry SIP incubation - 13C Acetate.DIC.H2 - RNA light fraction
title