SAMN12129107
External Id
Fisheries and Oceans Canada
INSDC center name
2019-06-24T00:00:00Z
INSDC first public
2024-05-06T21:10:00.433Z
INSDC last update
SRS5020784
INSDC secondary accession
live
INSDC status
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS5020784
SRA accession
mix
http://purl.obolibrary.org/obo/NCIT_C64925
age
see associated manuscript
collected by
Multiplexed mix of Pacific oyster
description
barcode_and_cutsite: CHN_1554 barcode: CTAAGGTAACGAT; FRA_1836 barcode: TTCGTGATTCGAT; QDC_1604 barcode: TCTAACGGACGAT; ROS_409 barcode: TTAGTCGGACGAT; CHNF_1524 barcode: CCTGAGATACGAT; QDC_1612 barcode: TCCAAGCTGCGAT; CHNF_1523 barcode: CTTGAGAATGTCGAT; CHNF_1513 barcode: CTTGACACCGCGAT; FRA_1811 barcode: TAAGGAGAACGAT; FRAF_1879 barcode: TTCCGATAACGAT; ROS_429 barcode: TTGGAGTGTCGAT; FRA_1809 barcode: CAGATCCATCGAT; RSC_1658 barcode: TTACAACCTCGAT; CHNF_1515 barcode: TCTTACACACGAT; CHN_1556 barcode: TGGAGGACGGACGAT; CHNF_1517 barcode: TTGGAGGCCAGCGAT; FRAF_1876 barcode: AAGAGGATTCGAT; CHNF_1518 barcode: TGAGCGGAACGAT; FRA_1807 barcode: TCTAGAGGTCGAT; RSC_1674 barcode: TCGCAATTACGAT; ROS_418 barcode: AACCATCCGCGAT; CHNF_1501 barcode: TTCTCATTGAACGAT; FRAF_1858 barcode: TAACAATCGGCGAT; neg_neg.p3411 barcode: TGGAGCTTCCTCGAT; ROS_403 barcode: TACCAAGATCGAT; FRAF_1871 barcode: CTGACCGAACGAT; GUR_585 barcode: TCTGGATGACGAT; CHNF_1506 barcode: TTCGAGACGCGAT; RSC_1662 barcode: ATCCGGAATCGAT; FRAF_1851 barcode: TCGCATCGTTCGAT; QDC_1606 barcode: CTGACATAATCGAT; FRA_1812 barcode: TCAGTCCGAACGAT; FRAF_1877 barcode: CAGAAGGAACGAT
design description
adult
http://www.ebi.ac.uk/efo/EFO_0001272
dev stage
mop_p3411_c01.fastq.gz
filename
Ion Torrent Proton
instrument model
mop_p3411
library id
single
library layout
Reduced Representation
library selection
GENOMIC
http://www.ebi.ac.uk/efo/EFO_0008479
library source
RAD-Seq
library strategy
Magallana gigas
http://purl.obolibrary.org/obo/NCBITaxon_29159
organism
ION_TORRENT
platform
mix
http://purl.obolibrary.org/obo/NCIT_C64925
strain
mantle
http://purl.obolibrary.org/obo/CL_0000236
tissue
GBS (pool) of Cgigas mantle
title
pool_of_indiv
title