SAMN12129111
External Id
Fisheries and Oceans Canada
INSDC center name
2019-06-24T00:00:00Z
INSDC first public
2024-05-06T21:10:00.512Z
INSDC last update
SRS5020786
INSDC secondary accession
live
INSDC status
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS5020786
SRA accession
mix
http://purl.obolibrary.org/obo/NCIT_C64925
age
see associated manuscript
collected by
Multiplexed mix of Pacific oyster
description
barcode_and_cutsite: JPN_103 barcode: CTAAGGTAACGAT; DPB_6 barcode: TTCGTGATTCGAT; DPB_34 barcode: TCTAACGGACGAT; JPN_106 barcode: TTAGTCGGACGAT; JPN_109 barcode: CCTGAGATACGAT; DPB_32 barcode: TCCAAGCTGCGAT; FRAF_1881 barcode: CTTGAGAATGTCGAT; FRA_1830 barcode: CTTGACACCGCGAT; DPB_5 barcode: TAAGGAGAACGAT; DPB_36 barcode: TTCCGATAACGAT; JPN_101 barcode: TTGGAGTGTCGAT; CHN_1559 barcode: CAGATCCATCGAT; JPN_115 barcode: TTACAACCTCGAT; JPN_111 barcode: TCTTACACACGAT; PENF_217 barcode: TGGAGGACGGACGAT; DPB_29 barcode: TTGGAGGCCAGCGAT; PENF_228 barcode: AAGAGGATTCGAT; JPN_116 barcode: TGAGCGGAACGAT; DPB_35 barcode: TCTAGAGGTCGAT; JPN_110 barcode: TCGCAATTACGAT; PENF_208 barcode: AACCATCCGCGAT; DPB_3 barcode: TTCTCATTGAACGAT; PENF_227 barcode: TAACAATCGGCGAT; neg_neg.p3421 barcode: TGGAGCTTCCTCGAT; FRA_1835 barcode: TACCAAGATCGAT; JPN_120 barcode: CTGACCGAACGAT; FRAF_1880 barcode: TCTGGATGACGAT; DPB_28 barcode: TTCGAGACGCGAT; JPN_105 barcode: ATCCGGAATCGAT; DPB_26 barcode: TCGCATCGTTCGAT; JPN_122 barcode: CTGACATAATCGAT; SER_1252 barcode: TCAGTCCGAACGAT; HIS_1234 barcode: CAGAAGGAACGAT
design description
adult
http://www.ebi.ac.uk/efo/EFO_0001272
dev stage
mop_p3421_c01.fastq.gz
filename
Ion Torrent Proton
instrument model
mop_p3421
library id
single
library layout
Reduced Representation
library selection
GENOMIC
http://www.ebi.ac.uk/efo/EFO_0008479
library source
RAD-Seq
library strategy
Magallana gigas
http://purl.obolibrary.org/obo/NCBITaxon_29159
organism
ION_TORRENT
platform
mix
http://purl.obolibrary.org/obo/NCIT_C64925
strain
mantle
http://purl.obolibrary.org/obo/CL_0000236
tissue
GBS (pool) of Cgigas mantle
title
pool_of_indiv
title