no
16S recovered
Anvi'o v6.0 (using Prokka v1.14.3)
16S recovery software
SAMN13287945
External Id
GNS Science
INSDC center name
2020-05-01T00:00:00Z
INSDC first public
2024-05-01T21:08:14.562Z
INSDC last update
live
INSDC status
MIMAG.water
NCBI submission model
MIMAG.water.6.0
NCBI submission package
ERS22784521
SRA accession
metagenome-assembled genome
analysis project type
Medium
http://purl.obolibrary.org/obo/NCIT_C48164
assembly quality
Megahit v.1.1.13
assembly software
kmer+coverage
bin parameters
Anvi'o v6.0 (using CONCOCT v1.1.0)
binning software
2018/2019
collection date
67.6056338028169
completeness score
Anvi'o v6.0
completeness software
0
contamination score
4216
contig L50
Anvi'o v6.0
decontamination software
0-25cm
http://purl.obolibrary.org/obo/UO_0000015
depth
This BioSample is a metagenomic assembly obtained from the marine sediment metagenome BioSamples: SAMN12673430,SAMN12673432,SAMN12673436,SAMN12673456, SAMN12673457, and SAMN12673458
derived-from
Keywords: GSC:MIxS;MIMAG:6.0
description
-1974m
http://www.ebi.ac.uk/efo/EFO_0006768
elev
marine cold seep biome [ENVO:01000127] | marine bathyal zone biome [ENVO:01000026] | marine benthic biome [ENVO:01000024]
env_broad_scale
cold seep [ENVO:01000263] | marine cold seep biome [ENVO:01000127] |
env_local_scale
marine sediment [ENVO:03000033]
env_medium
1
environmental sample
New Zealand: Hikurangi Margin
geo loc name
GLR1625
isolate
Glendhu Ridge methane seep
isolation source
41.77033333 S 176.0835 E
lat lon
marine sediment metagenome
metagenome source
1
metagenomic
Metagenome-assembled genome from metagenomes SRR10375097-9 and SRR10097245-7
note
616
number of contigs
Lysobacterales bacterium
http://purl.obolibrary.org/obo/NCBITaxon_2006849
organism
no
reassembly post binning
0.0707845775204662
relative coverage Anaerobic (SRR10097246)
0.145284057722877
relative coverage Anoxic (SRR10375098)
0.0259696265243628
relative coverage Infiltration (SRR10097247)
0.314099290137987
relative coverage Low pH (SRR10097245)
0.44235352872105
relative coverage Oxic (SRR10375099)
0.00150891937325495
relative coverage Reference (SRR10375097)
metagenomic assembly
sample-type
multi-marker approach (GTDBTk)
taxa id
Metagenome-assembled genome GLR1625
title
2545096
total assembly size