SAMN12129108
External Id
Fisheries and Oceans Canada
INSDC center name
2019-06-24T00:00:00Z
INSDC first public
2024-05-06T21:10:00.453Z
INSDC last update
SRS5020783
INSDC secondary accession
live
INSDC status
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS5020783
SRA accession
mix
http://purl.obolibrary.org/obo/NCIT_C64925
age
see associated manuscript
collected by
Multiplexed mix of Pacific oyster
description
barcode_and_cutsite: FRA_1804 barcode: CTAAGGTAACGAT; CHN_1574 barcode: TTCGTGATTCGAT; FRA_1835 barcode: TCTAACGGACGAT; GUR_588 barcode: TTAGTCGGACGAT; ROS_422 barcode: CCTGAGATACGAT; RSC_1671 barcode: TCCAAGCTGCGAT; GUR_590 barcode: CTTGAGAATGTCGAT; FRA_1841 barcode: CTTGACACCGCGAT; GUR_592 barcode: TAAGGAGAACGAT; FRAF_1880 barcode: TTCCGATAACGAT; QDC_1618 barcode: TTGGAGTGTCGAT; RSC_1663 barcode: CAGATCCATCGAT; FRA_1845 barcode: TTACAACCTCGAT; ROS_427 barcode: TCTTACACACGAT; RSC_1664 barcode: TGGAGGACGGACGAT; CHN_1565 barcode: TTGGAGGCCAGCGAT; QDC_1622 barcode: AAGAGGATTCGAT; CHN_1553 barcode: TGAGCGGAACGAT; RSC_1659 barcode: TCTAGAGGTCGAT; RSC_1656 barcode: TCGCAATTACGAT; CHNF_1502 barcode: AACCATCCGCGAT; CHNF_1509 barcode: TTCTCATTGAACGAT; FRA_1806 barcode: TAACAATCGGCGAT; neg_neg.p3412 barcode: TGGAGCTTCCTCGAT; GUR_593 barcode: TACCAAGATCGAT; QDC_1615 barcode: CTGACCGAACGAT; CHN_1557 barcode: TCTGGATGACGAT; CHN_1560 barcode: TTCGAGACGCGAT; FRA_1838 barcode: ATCCGGAATCGAT; QDC_1619 barcode: TCGCATCGTTCGAT; FRA_1805 barcode: CTGACATAATCGAT; ROS_424 barcode: TCAGTCCGAACGAT; ROS_420 barcode: CAGAAGGAACGAT
design description
adult
http://www.ebi.ac.uk/efo/EFO_0001272
dev stage
mop_p3412_c01.fastq.gz
filename
Ion Torrent Proton
instrument model
mop_p3412
library id
single
library layout
Reduced Representation
library selection
GENOMIC
http://www.ebi.ac.uk/efo/EFO_0008479
library source
RAD-Seq
library strategy
Magallana gigas
http://purl.obolibrary.org/obo/NCBITaxon_29159
organism
ION_TORRENT
platform
mix
http://purl.obolibrary.org/obo/NCIT_C64925
strain
mantle
http://purl.obolibrary.org/obo/CL_0000236
tissue
GBS (pool) of Cgigas mantle
title
pool_of_indiv
title