SAMN12129110
External Id
Fisheries and Oceans Canada
INSDC center name
2019-06-24T00:00:00Z
INSDC first public
2024-05-06T21:10:00.492Z
INSDC last update
SRS5020787
INSDC secondary accession
live
INSDC status
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS5020787
SRA accession
mix
http://purl.obolibrary.org/obo/NCIT_C64925
age
see associated manuscript
collected by
Multiplexed mix of Pacific oyster
description
barcode_and_cutsite: CHN_1563 barcode: CTAAGGTAACGAT; RSC_1660 barcode: TTCGTGATTCGAT; FRAF_1883 barcode: TCTAACGGACGAT; FRAF_1888 barcode: TTAGTCGGACGAT; CHN_1573 barcode: CCTGAGATACGAT; CHN_1552 barcode: TCCAAGCTGCGAT; QDC_1611 barcode: CTTGAGAATGTCGAT; RSC_1651 barcode: CTTGACACCGCGAT; ROS_421 barcode: TAAGGAGAACGAT; FRA_1832 barcode: TTCCGATAACGAT; CHNF_1507 barcode: TTGGAGTGTCGAT; FRAF_1874 barcode: CAGATCCATCGAT; CHNF_1510 barcode: TTACAACCTCGAT; GUR_546 barcode: TCTTACACACGAT; QDC_1617 barcode: TGGAGGACGGACGAT; FRAF_1864 barcode: TTGGAGGCCAGCGAT; RSC_1661 barcode: AAGAGGATTCGAT; RSC_1666 barcode: TGAGCGGAACGAT; GUR_591 barcode: TCTAGAGGTCGAT; GUR_532 barcode: TCGCAATTACGAT; RSC_1673 barcode: AACCATCCGCGAT; FRAF_1884 barcode: TTCTCATTGAACGAT; QDC_1601 barcode: TAACAATCGGCGAT; neg_neg.p3416 barcode: TGGAGCTTCCTCGAT; ROS_430 barcode: TACCAAGATCGAT; FRAF_1861 barcode: CTGACCGAACGAT; RSC_1667 barcode: TCTGGATGACGAT; RSC_1652 barcode: TTCGAGACGCGAT; PIP_354 barcode: ATCCGGAATCGAT; PIP_356 barcode: TCGCATCGTTCGAT; PIP_359 barcode: CTGACATAATCGAT; PIP_360 barcode: TCAGTCCGAACGAT; GUR_517 barcode: CAGAAGGAACGAT
design description
adult
http://www.ebi.ac.uk/efo/EFO_0001272
dev stage
mop_p3416_c01.fastq.gz
filename
Ion Torrent Proton
instrument model
mop_p3416
library id
single
library layout
Reduced Representation
library selection
GENOMIC
http://www.ebi.ac.uk/efo/EFO_0008479
library source
RAD-Seq
library strategy
Magallana gigas
http://purl.obolibrary.org/obo/NCBITaxon_29159
organism
ION_TORRENT
platform
mix
http://purl.obolibrary.org/obo/NCIT_C64925
strain
mantle
http://purl.obolibrary.org/obo/CL_0000236
tissue
GBS (pool) of Cgigas mantle
title
pool_of_indiv
title