SAMN12129112
External Id
Fisheries and Oceans Canada
INSDC center name
2019-06-24T00:00:00Z
INSDC first public
2024-05-06T21:10:00.533Z
INSDC last update
SRS5020789
INSDC secondary accession
live
INSDC status
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS5020789
SRA accession
mix
http://purl.obolibrary.org/obo/NCIT_C64925
age
see associated manuscript
collected by
Multiplexed mix of Pacific oyster
description
barcode_and_cutsite: DPB_39 barcode: CTAAGGTAACGAT; PENF_229 barcode: TTCGTGATTCGAT; DPB_30 barcode: TCTAACGGACGAT; JPN_102 barcode: TTAGTCGGACGAT; CHN_1558 barcode: CCTGAGATACGAT; DPB_4 barcode: TCCAAGCTGCGAT; DPB_25 barcode: CTTGAGAATGTCGAT; JPN_117 barcode: CTTGACACCGCGAT; JPN_104 barcode: TAAGGAGAACGAT; DPB_31 barcode: TTCCGATAACGAT; JPN_108 barcode: TTGGAGTGTCGAT; JPN_113 barcode: CAGATCCATCGAT; RSC_1673 barcode: TTACAACCTCGAT; JPN_120 barcode: TCTTACACACGAT; JPN_112 barcode: TGGAGGACGGACGAT; DPB_2 barcode: TTGGAGGCCAGCGAT; SER_1249 barcode: AAGAGGATTCGAT; DPB_11 barcode: TGAGCGGAACGAT; JPN_107 barcode: TCTAGAGGTCGAT; JPN_118 barcode: TCGCAATTACGAT; PENF_224 barcode: AACCATCCGCGAT; DPB_16 barcode: TTCTCATTGAACGAT; PENF_221 barcode: TAACAATCGGCGAT; neg_neg.p3422 barcode: TGGAGCTTCCTCGAT; JPN_119 barcode: TACCAAGATCGAT; PENF_207 barcode: CTGACCGAACGAT; FRAF_1861 barcode: TCTGGATGACGAT; RSC_1656 barcode: TTCGAGACGCGAT; CHN_1573 barcode: ATCCGGAATCGAT; PENF_222 barcode: TCGCATCGTTCGAT; PENF_209 barcode: CTGACATAATCGAT; JPN_114 barcode: TCAGTCCGAACGAT; DPB_33 barcode: CAGAAGGAACGAT; DPB_1 barcode: TCCTCGAATCGAT
design description
adult
http://www.ebi.ac.uk/efo/EFO_0001272
dev stage
mop_p3422_c01.fastq.gz
filename
Ion Torrent Proton
instrument model
mop_p3422
library id
single
library layout
Reduced Representation
library selection
GENOMIC
http://www.ebi.ac.uk/efo/EFO_0008479
library source
RAD-Seq
library strategy
Magallana gigas
http://purl.obolibrary.org/obo/NCBITaxon_29159
organism
ION_TORRENT
platform
mix
http://purl.obolibrary.org/obo/NCIT_C64925
strain
mantle
http://purl.obolibrary.org/obo/CL_0000236
tissue
GBS (pool) of Cgigas mantle
title
pool_of_indiv
title