SAMN12129102
External Id
Fisheries and Oceans Canada
INSDC center name
2019-06-24T00:00:00Z
INSDC first public
2024-05-06T21:10:00.327Z
INSDC last update
SRS5020781
INSDC secondary accession
live
INSDC status
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS5020781
SRA accession
mix
http://purl.obolibrary.org/obo/NCIT_C64925
age
see associated manuscript
collected by
Multiplexed mix of Pacific oyster
description
barcode_and_cutsite: PIP_601 barcode: CTAAGGTAACGAT ; PIP_603 barcode: TTCGTGATTCGAT ; PIP_607 barcode: TCTAACGGACGAT ; PIP_613 barcode: TTAGTCGGACGAT ; PIP_624 barcode: CCTGAGATACGAT ; PIP_625 barcode: TCCAAGCTGCGAT ; PIP_630 barcode: CTTGAGAATGTCGAT ; PIP_631 barcode: CTTGACACCGCGAT ; PIP_643 barcode: TAAGGAGAACGAT ; PIP_684 barcode: TTCCGATAACGAT ; PIP_692 barcode: TTGGAGTGTCGAT ; PIP_695 barcode: CAGATCCATCGAT ; PEN_711 barcode: TTACAACCTCGAT ; PEN_712 barcode: TCTTACACACGAT ; PEN_726 barcode: TGGAGGACGGACGAT ; PEN_728 barcode: TTGGAGGCCAGCGAT ; PEN_731 barcode: AAGAGGATTCGAT ; PEN_737 barcode: TGAGCGGAACGAT ; PEN_739 barcode: TCTAGAGGTCGAT ; PEN_740 barcode: TCGCAATTACGAT ; PEN_747 barcode: AACCATCCGCGAT ; PEN_749 barcode: TTCTCATTGAACGAT ; PEN_750 barcode: TAACAATCGGCGAT ; PEN_753 barcode: TGGAGCTTCCTCGAT ; PEN_780 barcode: TACCAAGATCGAT ; PEN_781 barcode: CTGACCGAACGAT ; PEN_784 barcode: TCTGGATGACGAT ; PEN_785 barcode: TTCGAGACGCGAT ; PEN_787 barcode: ATCCGGAATCGAT ; PEN_788 barcode: TCGCATCGTTCGAT ; PEN_789 barcode: CTGACATAATCGAT ; PEN_790 barcode: TCAGTCCGAACGAT ; PEN_791 barcode: CAGAAGGAACGAT ; PEN_792 barcode: TCCTCGAATCGAT ; PEN_798 barcode: TCTATTCGTCGAT ; PEN_799 barcode: TGCCACGAACGAT ; PEN_803 barcode: TCGACCACTCGAT ; PIP_915 barcode: TAAGCCATTGTCGAT ; PIP_920 barcode: TTCCACTTCGCGAT ; PIP_924 barcode: TAAGGCAACCACGAT ; PIP_926 barcode: CTGCAAGTTCGAT ; PIP_928 barcode: TAGGTGGTTCGAT ; PIP_929 barcode: AGGCAATTGCGAT ; PIP_931 barcode: AACCTCATTCGAT ; PIP_933 barcode: CGAGGTTATCGAT ; PIP_943 barcode: AAGGAATCGTCGAT ; PIP_944 barcode: AGCACGAATCGAT ; PIP_947 barcode: TTCTAAGAGACGAT
design description
adult
http://www.ebi.ac.uk/efo/EFO_0001272
dev stage
MOP_004_50pM_2018-04-18.fastq.gz
filename
MOP_004_200pM_2018-04-21.fastq.gz
filename2
R_2018_04_07_15_17_36_user_Genetics-362-MOP_0004.fastq.gz
filename3
Ion Torrent Proton
instrument model
mop_004
library id
single
library layout
Reduced Representation
library selection
GENOMIC
http://www.ebi.ac.uk/efo/EFO_0008479
library source
RAD-Seq
library strategy
Magallana gigas
http://purl.obolibrary.org/obo/NCBITaxon_29159
organism
ION_TORRENT
platform
mix
http://purl.obolibrary.org/obo/NCIT_C64925
strain
mantle
http://purl.obolibrary.org/obo/CL_0000236
tissue
GBS (pool) of Cgigas mantle
title
pool_of_indiv
title