SAMN12129104
External Id
Fisheries and Oceans Canada
INSDC center name
2019-06-24T00:00:00Z
INSDC first public
2024-05-06T21:10:00.374Z
INSDC last update
SRS5020779
INSDC secondary accession
live
INSDC status
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS5020779
SRA accession
mix
http://purl.obolibrary.org/obo/NCIT_C64925
age
see associated manuscript
collected by
Multiplexed mix of Pacific oyster
description
barcode_and_cutsite: PIP_358 barcode: CTAAGGTAACGAT ; PENF_225 barcode: TTCGTGATTCGAT ; PIP_342 barcode: TCTAACGGACGAT ; DPB_9 barcode: TTAGTCGGACGAT ; PEN_719 barcode: CCTGAGATACGAT ; RSC_1669 barcode: TCCAAGCTGCGAT ; PEN_720 barcode: CTTGAGAATGTCGAT ; PENF_201 barcode: CTTGACACCGCGAT ; PENF_202 barcode: TAAGGAGAACGAT ; PENF_203 barcode: TTCCGATAACGAT ; PENF_204 barcode: TTGGAGTGTCGAT ; PENF_205 barcode: CAGATCCATCGAT ; PENF_206 barcode: TTACAACCTCGAT ; FRA_1823 barcode: TCTTACACACGAT ; DPB_2 barcode: TGGAGGACGGACGAT ; DPB_7 barcode: TTGGAGGCCAGCGAT ; PENF_210 barcode: AAGAGGATTCGAT ; PENF_211 barcode: TGAGCGGAACGAT ; PENF_212 barcode: TCTAGAGGTCGAT ; PENF_213 barcode: TCGCAATTACGAT ; PENF_214 barcode: AACCATCCGCGAT ; PENF_215 barcode: TTCTCATTGAACGAT ; PENF_216 barcode: TAACAATCGGCGAT ; neg_neg.p3408 barcode: TGGAGCTTCCTCGAT ; PEN_723 barcode: TACCAAGATCGAT ; PENF_218 barcode: CTGACCGAACGAT ; PENF_219 barcode: TCTGGATGACGAT ; PENF_220 barcode: TTCGAGACGCGAT ; DPB_3 barcode: ATCCGGAATCGAT ; DPB_6 barcode: TCGCATCGTTCGAT ; PENF_226 barcode: CTGACATAATCGAT ; PEN_717 barcode: TCAGTCCGAACGAT
design description
adult
http://www.ebi.ac.uk/efo/EFO_0001272
dev stage
mop_p3408_c01.fastq.gz
filename
Ion Torrent Proton
instrument model
mop_p3408
library id
single
library layout
Reduced Representation
library selection
GENOMIC
http://www.ebi.ac.uk/efo/EFO_0008479
library source
RAD-Seq
library strategy
Magallana gigas
http://purl.obolibrary.org/obo/NCBITaxon_29159
organism
ION_TORRENT
platform
mix
http://purl.obolibrary.org/obo/NCIT_C64925
strain
mantle
http://purl.obolibrary.org/obo/CL_0000236
tissue
GBS (pool) of Cgigas mantle
title
pool_of_indiv
title