SAMN12129106
External Id
Fisheries and Oceans Canada
INSDC center name
2019-06-24T00:00:00Z
INSDC first public
2024-05-06T21:10:00.413Z
INSDC last update
SRS5020785
INSDC secondary accession
live
INSDC status
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS5020785
SRA accession
mix
http://purl.obolibrary.org/obo/NCIT_C64925
age
see associated manuscript
collected by
Multiplexed mix of Pacific oyster
description
barcode_and_cutsite: FRA_1826 barcode: CTAAGGTAACGAT; QDC_1620 barcode: TTCGTGATTCGAT; FRAF_1866 barcode: TCTAACGGACGAT; GUR_576 barcode: TTAGTCGGACGAT; GUR_577 barcode: CCTGAGATACGAT; CHNF_1511 barcode: TCCAAGCTGCGAT; ROS_428 barcode: CTTGAGAATGTCGAT; QDC_1621 barcode: CTTGACACCGCGAT; ROS_401 barcode: TAAGGAGAACGAT; CHNF_1516 barcode: TTCCGATAACGAT; ROS_404 barcode: TTGGAGTGTCGAT; RSC_1654 barcode: CAGATCCATCGAT; ROS_410 barcode: TTACAACCTCGAT; GUR_578 barcode: TCTTACACACGAT; FRAF_1882 barcode: TGGAGGACGGACGAT; QDC_1608 barcode: TTGGAGGCCAGCGAT; ROS_406 barcode: AAGAGGATTCGAT; CHN_1569 barcode: TGAGCGGAACGAT; FRA_1830 barcode: TCTAGAGGTCGAT; CHNF_1512 barcode: TCGCAATTACGAT; CHN_1564 barcode: AACCATCCGCGAT; FRAF_1885 barcode: TTCTCATTGAACGAT; QDC_1623 barcode: TAACAATCGGCGAT; neg_neg.p3410 barcode: TGGAGCTTCCTCGAT; FRA_1831 barcode: TACCAAGATCGAT; QDC_1624 barcode: CTGACCGAACGAT; RSC_1653 barcode: TCTGGATGACGAT; CHN_1566 barcode: TTCGAGACGCGAT; QDC_1613 barcode: ATCCGGAATCGAT; FRAF_1890 barcode: TCGCATCGTTCGAT; FRAF_1887 barcode: CTGACATAATCGAT; CHN_1558 barcode: TCAGTCCGAACGAT; ROS_423 barcode: CAGAAGGAACGAT
design description
adult
http://www.ebi.ac.uk/efo/EFO_0001272
dev stage
mop_p3410_c01.fastq.gz
filename
Ion Torrent Proton
instrument model
mop_p3410
library id
single
library layout
Reduced Representation
library selection
GENOMIC
http://www.ebi.ac.uk/efo/EFO_0008479
library source
RAD-Seq
library strategy
Magallana gigas
http://purl.obolibrary.org/obo/NCBITaxon_29159
organism
ION_TORRENT
platform
mix
http://purl.obolibrary.org/obo/NCIT_C64925
strain
mantle
http://purl.obolibrary.org/obo/CL_0000236
tissue
GBS (pool) of Cgigas mantle
title
pool_of_indiv
title