SAMN12129109
External Id
Fisheries and Oceans Canada
INSDC center name
2019-06-24T00:00:00Z
INSDC first public
2024-05-06T21:10:00.473Z
INSDC last update
SRS5020782
INSDC secondary accession
live
INSDC status
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS5020782
SRA accession
mix
http://purl.obolibrary.org/obo/NCIT_C64925
age
see associated manuscript
collected by
Multiplexed mix of Pacific oyster
description
barcode_and_cutsite: QDC_1607 barcode: CTAAGGTAACGAT; FRAF_1875 barcode: TTCGTGATTCGAT; FRA_1828 barcode: TCTAACGGACGAT; CHNF_1522 barcode: TTAGTCGGACGAT; FRA_1834 barcode: CCTGAGATACGAT; QDC_1609 barcode: TCCAAGCTGCGAT; CHNF_1519 barcode: CTTGAGAATGTCGAT; ROS_412 barcode: CTTGACACCGCGAT; GUR_594 barcode: TAAGGAGAACGAT; RSC_1665 barcode: TTCCGATAACGAT; ROS_419 barcode: TTGGAGTGTCGAT; RSC_1657 barcode: CAGATCCATCGAT; FRAF_1859 barcode: TTACAACCTCGAT; GUR_531 barcode: TCTTACACACGAT; QDC_1610 barcode: TGGAGGACGGACGAT; CHN_1562 barcode: TTGGAGGCCAGCGAT; QDC_1616 barcode: AAGAGGATTCGAT; FRAF_1850 barcode: TGAGCGGAACGAT; RSC_1655 barcode: TCTAGAGGTCGAT; CHN_1572 barcode: TCGCAATTACGAT; CHN_1567 barcode: AACCATCCGCGAT; CHNF_1508 barcode: TTCTCATTGAACGAT; CHN_1570 barcode: TAACAATCGGCGAT; neg_neg.p3415 barcode: TGGAGCTTCCTCGAT; ROS_414 barcode: TACCAAGATCGAT; ROS_411 barcode: CTGACCGAACGAT; GUR_533 barcode: TCTGGATGACGAT; CHNF_1504 barcode: TTCGAGACGCGAT; ROS_402 barcode: ATCCGGAATCGAT; RSC_1668 barcode: TCGCATCGTTCGAT; FRA_1833 barcode: CTGACATAATCGAT; FRA_1825 barcode: TCAGTCCGAACGAT; RSC_1670 barcode: CAGAAGGAACGAT; HIS_1234 barcode: TCCTCGAATCGAT
design description
adult
http://www.ebi.ac.uk/efo/EFO_0001272
dev stage
mop_p3415_c01.fastq.gz
filename
Ion Torrent Proton
instrument model
mop_p3415
library id
single
library layout
Reduced Representation
library selection
GENOMIC
http://www.ebi.ac.uk/efo/EFO_0008479
library source
RAD-Seq
library strategy
Magallana gigas
http://purl.obolibrary.org/obo/NCBITaxon_29159
organism
ION_TORRENT
platform
mix
http://purl.obolibrary.org/obo/NCIT_C64925
strain
mantle
http://purl.obolibrary.org/obo/CL_0000236
tissue
GBS (pool) of Cgigas mantle
title
pool_of_indiv
title