SAMN12129105
External Id
Fisheries and Oceans Canada
INSDC center name
2019-06-24T00:00:00Z
INSDC first public
2024-05-06T21:10:00.393Z
INSDC last update
SRS5020778
INSDC secondary accession
live
INSDC status
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS5020778
SRA accession
mix
http://purl.obolibrary.org/obo/NCIT_C64925
age
see associated manuscript
collected by
Multiplexed mix of Pacific oyster
description
barcode_and_cutsite: GUR_510 barcode: CTAAGGTAACGAT; QDC_1602 barcode: TTCGTGATTCGAT; QDC_1605 barcode: TCTAACGGACGAT; GUR_537 barcode: TTAGTCGGACGAT; QDC_1603 barcode: CCTGAGATACGAT; FRAF_1872 barcode: TCCAAGCTGCGAT; ROS_413 barcode: CTTGAGAATGTCGAT; FRA_1843 barcode: CTTGACACCGCGAT; CHN_1568 barcode: TAAGGAGAACGAT; GUR_538 barcode: TTCCGATAACGAT; GUR_539 barcode: TTGGAGTGTCGAT; CHN_1561 barcode: CAGATCCATCGAT; GUR_544 barcode: TTACAACCTCGAT; CHN_1571 barcode: TCTTACACACGAT; QDC_1614 barcode: TGGAGGACGGACGAT; ROS_417 barcode: TTGGAGGCCAGCGAT; GUR_560 barcode: AAGAGGATTCGAT; CHNF_1503 barcode: TGAGCGGAACGAT; CHNF_1505 barcode: TCTAGAGGTCGAT; RSC_1672 barcode: TCGCAATTACGAT; FRAF_1881 barcode: AACCATCCGCGAT; GUR_566 barcode: TTCTCATTGAACGAT; CHN_1551 barcode: TAACAATCGGCGAT; neg_neg.p3409 barcode: TGGAGCTTCCTCGAT; CHN_1555 barcode: TACCAAGATCGAT; GUR_567 barcode: CTGACCGAACGAT; FRA_1842 barcode: TCTGGATGACGAT; CHNF_1520 barcode: TTCGAGACGCGAT; CHNF_1514 barcode: ATCCGGAATCGAT; CHNF_1521 barcode: TCGCATCGTTCGAT; GUR_571 barcode: CTGACATAATCGAT; FRA_1821 barcode: TCAGTCCGAACGAT; FRAF_1867 barcode: CAGAAGGAACGAT
design description
adult
http://www.ebi.ac.uk/efo/EFO_0001272
dev stage
mop_p3409_c01.fastq.gz
filename
Ion Torrent Proton
instrument model
mop_p3409
library id
single
library layout
Reduced Representation
library selection
GENOMIC
http://www.ebi.ac.uk/efo/EFO_0008479
library source
RAD-Seq
library strategy
Magallana gigas
http://purl.obolibrary.org/obo/NCBITaxon_29159
organism
ION_TORRENT
platform
mix
http://purl.obolibrary.org/obo/NCIT_C64925
strain
mantle
http://purl.obolibrary.org/obo/CL_0000236
tissue
GBS (pool) of Cgigas mantle
title
pool_of_indiv
title