characteristics.text: 2025-01-08
characteristics.characteristic: ENA first public
characteristics.text: ERC000011
characteristics.characteristic: ENA-CHECKLIST
characteristics.text: SCK CEN
characteristics.characteristic: INSDC center name
characteristics.text: public
characteristics.characteristic: INSDC status
characteristics.text: ERS20213347
characteristics.characteristic: SRA accession
characteristics.text: E-MTAB-14150:D56_0_24h_3
characteristics.characteristic: Submitter Id
characteristics.text: ArrayExpress
characteristics.characteristic: broker name
characteristics.text: not collected
characteristics.characteristic: collection date
characteristics.text: human
characteristics.characteristic: common name
characteristics.text: Protocols: Human forebrain organoids were irradiated and samples were lysed at 6 h, 24 h and 14 d following IR exposure. Organoid lysis was performed in RLT Plus lysis buffer (Qiagen, #74136) and samples were stored at -80°C. Total RNA extraction was performed by using the RNeasy Mini Kit (Qiagen, #74136). RNA quality was determined using the 5400 Agilent fragment analyzer system (Agilent Technologies, United States). Most of the samples had RNA integrity numbers >9.0. cDNA library construction and sequencing were performed by NovoGene (Cambridge, United Kingdom). Messenger RNA was purified from total RNA using poly-T oligo-attached magnetic beads. After fragmentation, the first strand cDNA was synthesized using random hexamer primers, followed by the second strand cDNA synthesis using either dUTP for directional library or dTTP for non-directional library. For the non-directional library, it was ready after end repair, A-tailing, adapter ligation, size selection, amplification, and purification. The library was checked with Qubit and real-time PCR for quantification and bioanalyzer for size distribution detection.
characteristics.characteristic: description
characteristics.text: D56
characteristics.characteristic: developmental stage
characteristics.text: not collected
characteristics.characteristic: geographic location (country and/or sea)
characteristics.text: not applicable
characteristics.characteristic: isolate
characteristics.text: Homo sapiens
characteristics.characteristic: organism
characteristics.text: Homo sapiens
characteristics.characteristic: organism
characteristics.text: 3
characteristics.characteristic: replicate
characteristics.text: Homo sapiens
characteristics.characteristic: scientific_name
characteristics.text: D56_0_24h_3
characteristics.characteristic: title