SAMN34111325
External Id
Museo Nacional de Ciencias Naturales
INSDC center name
2024-03-26T00:00:00Z
INSDC first public
2024-12-01T08:18:04.630Z
INSDC last update
live
INSDC status
MIMAG.host-associated
NCBI submission model
MIMAG.host-associated.6.0
NCBI submission package
ERS22879519
SRA accession
2015-08-26
collection_date
Rickettsia africae strain AM14 whole genome isolated from Amblyomma sparsum. This tick was collected over a Bitis arietans snake in southwest Senegal. We used metagenomic sequencing and de novo assembly with BLAST custom database identification.
description
desert biome [ENVO:01000179]
env_broad_scale
arid biome [ENVO:01001838]
env_local_scale
desert biome [ENVO:01000179]
env_medium
TRUE
environmental-sample
Senegal: southwest region
geo_loc_name
127003
host_taxid
Senegal-AM14
isolate
desert biome [ENVO:01000179]
isolation_source
13.623339 N 16.430217 W
lat_lon
endosymbiont metagenome
metagenome-source
TRUE
metagenomic
Amblyomma sparsum
nat_host
Rickettsia africae
http://purl.obolibrary.org/obo/NCBITaxon_35788
organism
metagenomic assembly
sample_type
MIMAG Metagenome-assembled Genome sample from Rickettsia africae
title