SAMN37045233
External Id
G10K
INSDC center name
2023-08-18T00:00:00Z
INSDC first public
2024-08-09T17:11:21.573Z
INSDC last update
SRS22289852
INSDC secondary accession
live
INSDC status
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS22289852
SRA accession
0368347797
State of Louisiana Permit
2 years
age
Brian Crother: Southeastern Louisiana University
biomaterial_provider
Christopher Murray
collected_by
2020-11
collection_date
The American alligator (Alligator mississippiensis) is a large crocodilian reptile native to the Southeastern United States. It is one of the two extant species in the genus Alligator, the other being the Chinese alligator. This sample is from a female collected by Christopher Murray, coordinated by Brian Crother at Southeastern Louisiana University, to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis. The original sample was thought to be Eastern musk turtle (Sternotherus odoratus), but sequencing determined it to be an Alligator sample shipped with it.
description
adult
dev_stage
USA: Delacriox, Louisiana
geo_loc_name
rAllMis1
isolate
29.7616 N 89.7909 W
lat_lon
Alligator mississippiensis
http://purl.obolibrary.org/obo/NCBITaxon_8496
organism
female
sex
-80oC
store_cond
blood
tissue
Animal sample from Alligator mississippiensis (American alligator) for VGP reference genome, rAllMis1
title
ethanol
treatment