SAMN37010250
External Id
Microbiome Insights
INSDC center name
2024-09-25T00:50:19.060Z
INSDC first public
2024-09-25T00:50:19.060Z
INSDC last update
SRS18626139
INSDC secondary accession
live
INSDC status
MIGS/MIMS/MIMARKS.host-associated
NCBI submission model
MIMARKS.survey
NCBI submission model
MIMARKS.survey.host-associated.6.0
NCBI submission package
SRS18626139
SRA accession
2021-04-24
collection_date
Ailsa Craig
cultivar
14
days of infestation
Microbiome from caterpillar frass after feeding on tomato, Ailsa Craig Wild type genotype
description
plant-associated environment ENVO_01001001
env_broad_scale
cultivated environment ENVO_01000311
env_local_scale
fecal material ENVO:00002003
env_medium
Wild type
genotype
Canada
geographic location (country and/or sea)
Trichoplusia ni
host
cabagge looper
host_common_name
miens-survey
investigation_type
43.7844 N 79.1851 W
lat_lon
PCR
nucl_acid_amp
Qiagen MagAttract PowerSoil DNA KF
nucl_acid_ext
metagenome
http://purl.obolibrary.org/obo/NCBITaxon_256318
organism
515F:GTGCCAGCMGCCGCGGTAA 806R:GGACTACHVGGGTWTCTAAT
pcr_primers
The gut microbiome of the cabbage looper is modulated by tomato specialized metabolites
project_name
2
replicate
metagenome
scientific_name
Illumina MiSeq
seq_methods
16S rRNA
target_gene
Caterpillar frass after growing on tomato
title