SAMN37997691
External Id
USP
INSDC center name
2024-01-01T00:58:57.647Z
INSDC first public
2024-01-01T00:58:57.647Z
INSDC last update
SRS19293865
INSDC secondary accession
live
INSDC status
Plant
NCBI submission model
Plant.1.0
NCBI submission package
SRS19293865
SRA accession
2017
collection_date
Micro Tom
cultivar
MT plants were germinated in a 1:1 mixture of substrate:expanded vermiculite and grown under controlled conditions in a growth chamber at 25oC, 14 h photophase and 80% humidity. The shoot apex and axillary buds of 17-d-old tomato seedlings were inoculated with 70 L of 10^6 basidiospores in 0.3% agar-water (w/v), and the plants were kept in a humid chamber for 48 h. Control plants were treated with 0.3% agar-water. 5 replicates of roots from each treatment were collected at 5, 10, 20, and 30 dai.
design_description
not provided
dev_stage
R-CONT1-10_GAATTCGT-TAATCTTA_S13_AllLanes_R1_001.fastq
filename
fastq
filetype
Brazil
geo_loc_name
Illumina HiSeq 4000
instrument_model
CONT1-10
library_id
single
library_layout
RANDOM
library_selection
TRANSCRIPTOMIC
library_source
RNA-Seq
library_strategy
Solanum lycopersicum
http://purl.obolibrary.org/obo/NCBITaxon_4081
organism
ILLUMINA
platform
Root
tissue
Plant sample from Solanum lycopersicum
title
RNA-seq of roots from Solanum lycopersicum cv Micro-Tom infected with the fungus Moniliophthora perniciosa
title