PRJNA1038731
BioProject (physical sample)
SAMN38266576
External Id
University of Wisconsin-Madison
INSDC center name
2024-02-09T12:51:28.877Z
INSDC first public
2024-02-09T12:51:28.877Z
INSDC last update
live
INSDC status
MIMAG.miscellaneous
NCBI submission model
MIMAG.miscellaneous.6.0
NCBI submission package
SRP473582
Project Accession (physical sample)
SRR26909968
Run Accession (physical sample)
ERS18271569
SRA accession
268 m
altitude
2021-10-29
collection_date
DNeasy PowerSoil Pro kit (QIAGEN, Hilden, Germany)
collection_method
Keywords: GSC:MIxS;MIMAG:6.0
description
anaerobic conditions
diss_oxygen
bioreactor [ENVO:00002123]
env_broad_scale
anaerobic bioreactor [ENVO:00002124]
env_local_scale
biological waste material [ENVO:01000373]
env_medium
1
environmental-sample
NA
experimental_factor
USA: Madison, WI
geo_loc_name
UW_AWMP_BIF2_7
isolate
cottage cheese acid whey and ultra-filtered milk permeate fermenting bioreactor operated as a continuously stirred tank reactor with a six day solids and hydraulic retention time, under anaerobic conditions, at a pH of 5.5, at 35 C, and was fed cottage cheese acid whey and ultra-filtered milk permeate in a 50/50 v/v mixture. This sample was from day 0 of operation.
isolation_source
43.07381396 N 89.41403084 W
lat_lon
bioreactor metagenome
metagenome-source
1
metagenomic
Bifidobacterium crudilactis
http://purl.obolibrary.org/obo/NCBITaxon_327277
organism
5.5
ph
3300062704_36
ref_biomaterial
Syringe
samp_collect_device
Biomass centrifuged 10 min 10,000xg, aliquot frozen for DNA extraction
samp_mat_process
2 mL
samp_size
Freezer
samp_store_loc
-80 C
samp_store_temp
2 mL
samp_vol_we_dna_ext
metagenomic assembly
sample-type
Series1_r2
source_material_id
35 C
temp
MIMAG Metagenome-assembled Genome sample from Bifidobacterium crudilactis
title