PRJNA1038733
BioProject (physical sample)
SAMN38266595
External Id
University of Wisconsin-Madison
INSDC center name
2024-02-09T12:51:30.217Z
INSDC first public
2024-02-09T12:51:30.217Z
INSDC last update
live
INSDC status
MIMAG.miscellaneous
NCBI submission model
MIMAG.miscellaneous.6.0
NCBI submission package
SRP473592
Project Accession (physical sample)
SRR26909986
Run Accession (physical sample)
ERS18271590
SRA accession
268 m
altitude
2022-03-18
collection_date
DNeasy PowerSoil Pro kit (QIAGEN, Hilden, Germany)
collection_method
Keywords: GSC:MIxS;MIMAG:6.0
description
anaerobic conditions
diss_oxygen
bioreactor [ENVO:00002123]
env_broad_scale
anaerobic bioreactor [ENVO:00002124]
env_local_scale
biological waste material [ENVO:01000373]
env_medium
1
environmental-sample
Temperature = 50 C
experimental_factor
USA: Madison, WI
geo_loc_name
UW_AWMP_ENTER1_2
isolate
cottage cheese acid whey and ultra-filtered milk permeate fermenting bioreactor operated as a continuously stirred tank reactor with a six day solids and hydraulic retention time, under anaerobic conditions, at a pH of 5.5, at 50 C, and was fed cottage cheese acid whey and ultra-filtered milk permeate in a 50/50 v/v mixture. This sample was from the 140th day of operation.
isolation_source
43.07381396 N 89.41403084 W
lat_lon
bioreactor metagenome
metagenome-source
1
metagenomic
Rahnella inusitata
http://purl.obolibrary.org/obo/NCBITaxon_58169
organism
5.5
ph
3300063228_27
ref_biomaterial
Syringe
samp_collect_device
Biomass centrifuged 10 min 10,000xg, aliquot frozen for DNA extraction
samp_mat_process
2 mL
samp_size
Freezer
samp_store_loc
-80 C
samp_store_temp
2 mL
samp_vol_we_dna_ext
metagenomic assembly
sample-type
B1_r2
source_material_id
50 C
temp
MIMAG Metagenome-assembled Genome sample from Rahnella inusitata
title