SAMN38264304
External Id
University of Virginia's College at Wise
INSDC center name
2023-11-18T00:00:00Z
INSDC first public
2024-04-23T16:28:48.267Z
INSDC last update
SRS21104856
INSDC secondary accession
live
INSDC status
Metagenome or environmental
NCBI submission model
Metagenome.environmental.1.0
NCBI submission package
SRS21104856
SRA accession
2022-09
collection_date
USA: Virginia,St. Paul
geo_loc_name
not applicable
host
10 Liters of water were removed from the Clinch River and incubated in a 10 gallon fish tank for 24 hours with the Unionid mussel Lampsillis ovata . 1 Liter of water was passed through a 0.45 micron filter. DNA was extracted from the microbes caught on the filter using Qiagens Power Water kit. 18S eukaryotic barcodes were PCR amplified. Illumina sequencing, including library preparation, was completed by Azenta (South Plainfield, NJ, USA).
isolation_source
36.54 N 82.18 W
lat_lon
freshwater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_449393
organism
42
source_material_id
Eukaryotic 18S Metabarcoding Analysis of water from the Clinch River, Virginia, USA, incubated in a fish tank with Lampsillis ovata for 24 hours replicate 3
title