SAMN38761736
External Id
Julius Kuhn Institut
INSDC center name
2024-08-02T00:00:00Z
INSDC first public
2024-08-02T06:56:02.724Z
INSDC last update
SRS19831192
INSDC secondary accession
live
INSDC status
MIMARKS.survey
NCBI submission model
MIGS/MIMS/MIMARKS.soil
NCBI submission model
MIMARKS.survey.soil.6.0
NCBI submission package
III
Replicate
SRS19831192
SRA accession
Annual mean: 1379 ± 58 mm (no seasonality within the year)
annual_season_precpt
Annual Mean maximum: 23.0 ± 0.1°C, annual mean minimum: 11.3 ± 0.6 °C (January (warmest): 23.0 ± 0.5°C/ July (coldest): 10.9 ± 0.9 °C)
annual_season_temp
2019
collection_date
NA
crop_rotation
pastureland (grasslands used for livestock grazing)
cur_land_use
Natural grassland
cur_vegetation
0-15 cm
depth
Natural Grassland, Bulk Soil, Replicate III
description
0.5g
dna_extraction_amount
FastDNA SPIN kit for soil
dna_extraction_method
poorly
drainage_class
57 m
elev
Mineral
env_broad_scale
Soil
env_local_scale
Bulk Soil
env_medium
Typic Argiudolls
fao_class
Uruguay
geo_loc_name
A horizon
horizon
33.15544 S 54.29281 W
lat_lon
http://www.inia.uy/gras/Clima/Banco-datos-agroclimatico
link_climate_info
metagenome
http://purl.obolibrary.org/obo/NCBITaxon_256318
organism
Bacteria
organism_type
Natural grasslands (before 1995)
previous_land_use
soil core auger (2 cm diameter)
samp_collect_device
15–20 soil core samples per replicate were randomly collected between plants with a soil core auger (2 cm diameter) at 0–15 cm depth, mixed and homogenized by sieving with 5 mm mesh size (roots and stones were removed) immediately after sampling. For microbial analysis, samples were stored at −20◦C until total community DNA (TC-DNA) extraction.
samp_mat_process
Illumina MiSeq
sequencing_platform
Sieving with 5 mm mesh size
sieving
stored at -20°C, immediate extraction
store_cond
39% sand, 39% silt, 22% clay
texture
MIMARKS Survey related sample from metagenome
title