SAMN38726631
External Id
Centers for Disease Control and Prevention
INSDC center name
2024-05-07T00:00:00Z
INSDC first public
2024-05-07T08:26:01.901Z
INSDC last update
live
INSDC status
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
ERS19865958
SRA accession
bwa 0.7.17; samtools 1.10; cutadapt 2.3; printseq 0.20.3; picard 2.23.0; BEDTools 2.27.1; SPAdes 3.14.4
assembly_protocol
Elizabeth Shedroff, Jorge Garcia, Carina Sen, Cintia fabbri, Yael Nazar, Shannon Whitmer, Alejandra Morales, Joel Montgomery, John Klena
author
Viral Special Pathogens Branch, US CDC
collected_by
1990
collection_date
NEBNext Ultra II Library Prep Kit for Illumina, Section 4: Protocols for use with Purified mRNA or rRNA depleted RNA
design_description
36_S2_L001_R1_001.fastq.gz
filename
36_S2_L001_R2_001.fastq.gz
filename2
fastq
filetype
Argentina
geo_loc_name
Necromys sp.
host
not applicable
host_disease
Illumina Miseq
instrument_model
13796|L|Maciel virus|Argentina|1990
isolate
not provided
isolation_source
34 S 64 W
lat_lon
13796_L
library_id
paired
library_layout
RANDOM
library_selection
METAGENOMIC
library_source
WGS
library_strategy
13796|L|Maciel virus|Argentina|1990
ncbi_sequence_name_biosample_genbank
HANTA_13796_L
ncbi_sequence_name_sra
Orthohantavirus andesense
http://purl.obolibrary.org/obo/NCBITaxon_1980456
organism
ILLUMINA
platform
/scicomp/groups-pure/OID/NCEZID/DHCPP/VSPB/Diagnostics/Elizabeth/Sequencing_Runs_raw_data_and_analysis_INEVH_ARENA_5JUN23/FASTQ_Generation_2023-06-09_18_47_23Z-675864190/36_S2_L001_R1_001.fastq.gz
sra_file_path_1
/scicomp/groups-pure/OID/NCEZID/DHCPP/VSPB/Diagnostics/Elizabeth/Sequencing_Runs_raw_data_and_analysis_INEVH_ARENA_5JUN23/FASTQ_Generation_2023-06-09_18_47_23Z-675864190/36_S2_L001_R2_001.fastq.gz
sra_file_path_2
Pathogen: clinical or host-associated sample from Orthohantavirus andesense
title
NGS-of-Hanta-isolates-SouthAmerica
title