SAMN39501082
External Id
University of Massachusetts Chan Medical School
INSDC center name
2024-11-22T00:40:26.603Z
INSDC first public
2024-11-22T00:40:26.603Z
INSDC last update
SRS20186167
INSDC secondary accession
live
INSDC status
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS20186167
SRA accession
Marian Walhout Lab, University of Massachusetts Chan Medical School. Address: 368 Plantation Street, Albert Sherman Center, Worcester, MA 01605, USA
biomaterial_provider
Hefei Zhang, University of Massachusetts Chan Medical School
collected_by
2021-01-01/2021-01-12
collection_date
Multiplexed RNA-seq library generated by Worm Perturb-seq (WPS) technology. Contains the triplicate samples for ~16 RNAi conditions targeting different metabolic genes and six samples from empty vector control treatment. To analyze the data, refer to our publication/GEO session for the metadata table and WPS data processing pipeline.
description
Gravid adult (63-66 hours post L1 seeding)
dev_stage
USA: Worcester, Massachusetts
geo_loc_name
Caenorhabditis elegans
http://purl.obolibrary.org/obo/NCBITaxon_6239
organism
Whole organism
sample_type
hermaphrodite
sex
fresh sample
store_cond
N2
strain
Whole animal (excluding eggs)
tissue
Metabolic gene WPS series met7-lib1
title
Including empty vector controls and single gene RNAi knockdown for genes: alh-11, enol-1, C46C2.5, fbp-1, klo-2, D2063.1, aldo-2, MULTIPLE-gpd-1-2-3-4, pyk-1, tps-1, klo-1, gpd-2, gyg-1, shpk-1, R02D5.3.
treatment