SAMN39598600
External Id
National Jewish Health
INSDC center name
2024-01-24T00:00:00Z
INSDC first public
2024-10-17T12:35:15.223Z
INSDC last update
SRS20244132
INSDC secondary accession
live
INSDC status
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
SRS20244132
SRA accession
National Jewish Health (Denver, CO)
collected_by
2022
collection_date
NC00838-00792 initial WGS
description
Mexico
geo_loc_name
Homo sapiens
host
60 years
host_age
60-year-old man with psoriatic arthritis who received stem cell injection in Mexico into his right elbow ulna as a treatment for his psoriatic arthritis, complicated by M. abscessus subsp. massiliense infection of the right elbow.
host_description
bacterial arthritis
host_disease
Disease ongoing and still receiving antimicrobial treatment.
host_disease_outcome
Ill with notable signs of septic arthritis.
host_health_state
male
host_sex
right elbow ulna specimen
host_tissue_sampled
NC00838-00792
isolate
Infected at a commercial stem cell injection clinic
isolation_source
23.63 N 102.55 W
lat_lon
Mycobacteroides abscessus subsp. massiliense
http://purl.obolibrary.org/obo/NCBITaxon_1962118
organism
massiliense
sub_species
Mycobaterium abscessus subsp. massiliense
subgroup
Pathogen: clinical or host-associated sample from Mycobacteroides abscessus subsp. massiliense
title