SAMN40468454
External Id
University of Foggia
INSDC center name
2024-04-15T00:50:32.170Z
INSDC first public
2024-04-15T00:50:32.170Z
INSDC last update
SRS20761740
INSDC secondary accession
live
INSDC status
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
SRS20761740
SRA accession
Clinical Pathology Unit, SS Annunziata Hospital, Taranto, Italy
collected_by
2023
collection_date
Italy: Taranto
geo_loc_name
Homo sapiens
host
65
host_age
Medical history included pulmonary fibrosis, lung nodulectomy (2019), a colonoscopy (2021) and short courses of amoxicillin-clavulanate and levofloxacin within the previous 30 days. Arrival at the hospital with peritonitis secondary to perforated diverticula, then subjected to Hartmann hemicolectomy, positioning of drainages and transfer to ICU.
host_description
Peritonitis
host_disease
Recovery
host_disease_outcome
Immune-competent
host_health_state
male
host_sex
Stools
host_tissue_sampled
Rectal swab
isolation_source
40.27 N 17.14 E
lat_lon
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
TA_NDM-5
strain
Pathogen: clinical or host-associated sample from Escherichia coli
title