SAMN40418725
External Id
University of South Bohemia in Ceske Budejovice, Faculty of Science
INSDC center name
2024-03-12T00:00:00Z
INSDC first public
2024-04-04T10:19:41.533Z
INSDC last update
SRS20733523
INSDC secondary accession
live
INSDC status
MIMAG.host-associated
NCBI submission model
MIMAG.host-associated.6.0
NCBI submission package
SRS20733523
SRA accession
2020
collection_date
SRR28310196
derived-from
Neisseriaceae bacterium OTU5-Af was assembled from metagenomic data generated for sample of a fur swab from a yellow-necked mouse Apodemus flavicollis. In the phylogenetic tree, this bacterium is closely related to endosymbionts of rodent lice. Our results suggest that these bacteria possibly share evolutionary origin.
description
fur microbiome of yellow-necked mouse Apodemus flavicollis
env_broad_scale
fur swab from yellow-necked mouse Apodemus flavicollis
env_local_scale
neck fur of Apodemus flavicollis
env_medium
1
environmental-sample
Czechia: Branisov
geo_loc_name
Apodemus flavicollis
host
54292
host_taxid
swab of neck fur
host_tissue_sampled
OTU5-Af
isolate
neck fur swab of yellow-necked mouse
isolation_source
48.9779858 N 14.4172706 E
lat_lon
rodent metagenome
metagenome-source
1
metagenomic
Neisseriaceae bacterium
http://purl.obolibrary.org/obo/NCBITaxon_2014784
organism
metagenomic assembly
sample-type
Neisseriaceae bacterium OTU5-Af
title