SAMN40438884
External Id
NCSLPH Environmental Sciences Wastewater
INSDC center name
2024-03-13T00:00:00Z
INSDC first public
2024-03-13T10:38:24.027Z
INSDC last update
SRS20742606
INSDC secondary accession
live
INSDC status
SARS-CoV-2: wastewater surveillance
NCBI submission model
SARS-CoV-2.wwsurv.1.0
NCBI submission package
SRS20742606
SRA accession
North Carolina Department of Health and Human Services
collected_by
2023-12-29
collection_date
USA: North Carolina
geo_loc_name
wastewater
isolation_source
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
public health surveillance community-level
purpose_of_ww_sampling
public health surveillance for the NC Wastewater Monitoring Network
purpose_of_ww_sequencing
North Carolina State Laboratory of Public Health
sequenced_by
owasa
title
pepper mild mottle virus
ww_endog_control_1
racki et al. 2014; haramoto et al 201
ww_endog_control_1_protocol
9.538
ww_flow
0
ww_industrial_effluent_percent
78141
ww_population
census blocks clipped to wastewater service area polygon
ww_population_source
yes
ww_pre_treatment
24
ww_sample_duration
raw wastewater
ww_sample_matrix
wastewater treatment plant
ww_sample_site
composite
ww_sample_type
NC
ww_surv_jurisdiction
SLPH002113
ww_surv_system_sample_id
SARS-CoV-2
ww_surv_target_1
207200
ww_surv_target_1_conc
copies/L
ww_surv_target_1_conc_unit
N gene(n1)
ww_surv_target_1_gene
yes
ww_surv_target_1_known_present
decaro et al. detection of bovine coronavirus using a taqman-based real-time rt-pcr assay.
ww_surv_target_1_protocol
SARS-CoV-2
ww_surv_target_2
178280
ww_surv_target_2_conc
copies/L
ww_surv_target_2_conc_unit
N gene(n2)
ww_surv_target_2_gene
yes
ww_surv_target_2_known_present
4
ww_temperature