SAMN40438879
External Id
NCSLPH Environmental Sciences Wastewater
INSDC center name
2024-03-13T00:00:00Z
INSDC first public
2024-03-13T10:38:23.020Z
INSDC last update
SRS20742600
INSDC secondary accession
live
INSDC status
SARS-CoV-2: wastewater surveillance
NCBI submission model
SARS-CoV-2.wwsurv.1.0
NCBI submission package
SRS20742600
SRA accession
North Carolina Department of Health and Human Services
collected_by
2023-12-22
collection_date
USA: North Carolina
geo_loc_name
wastewater
isolation_source
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
public health surveillance community-level
purpose_of_ww_sampling
public health surveillance for the NC Wastewater Monitoring Network
purpose_of_ww_sequencing
North Carolina State Laboratory of Public Health
sequenced_by
jacksonville
title
pepper mild mottle virus
ww_endog_control_1
racki et al. 2014; haramoto et al 201
ww_endog_control_1_protocol
4.3248
ww_flow
41819
ww_population
census blocks clipped to wastewater service area polygon
ww_population_source
no
ww_pre_treatment
24
ww_sample_duration
raw wastewater
ww_sample_matrix
wastewater treatment plant
ww_sample_site
composite
ww_sample_type
NC
ww_surv_jurisdiction
SLPH002093
ww_surv_system_sample_id
SARS-CoV-2
ww_surv_target_1
218200
ww_surv_target_1_conc
copies/L
ww_surv_target_1_conc_unit
N gene(n1)
ww_surv_target_1_gene
yes
ww_surv_target_1_known_present
lu et al. us cdc real-time reverse transcription pcr panel for detection of severe acutre respirtaory syndrome coronavirus 2- volume 26, number 8 - august 2020 - emerging infectious diseases journal - cdc
ww_surv_target_1_protocol
SARS-CoV-2
ww_surv_target_2
244600
ww_surv_target_2_conc
copies/L
ww_surv_target_2_conc_unit
N gene(n2)
ww_surv_target_2_gene
yes
ww_surv_target_2_known_present
4
ww_temperature