SAMN41112434
External Id
China Agricultural University
INSDC center name
2024-04-29T00:00:00Z
INSDC first public
2024-04-29T13:34:27.610Z
INSDC last update
SRS21149689
INSDC secondary accession
live
INSDC status
Wuchuan No.1
Location
Metagenome or environmental
NCBI submission model
Metagenome.environmental.1.0
NCBI submission package
SRS21149689
SRA accession
not collected
age
2021-08-02
collection_date
not aplicable
cultivar
rhizosphere soil bacterial by 16S amplicon-sequencing in corresponding host
description
Soil bacterial communities were analyzed using high-throughput amplicon sequencing. Bacterial 16S rRNA gene V3-V4 region was amplified using primer 338F (5’- ACT CCT ACG GGA GGC AGC AG -3’) (Lane, 1991) and 806 R (5’-GGA CTA CHV GGG TWT CTA AT-3’) (Caporaso et al., 2011; Walters et al., 2016)
design_description
mature
dev_stage
not aplicable
ecotype
W1L_Zh9.338F_806R.R1.raw.fastq.gz
filename
W1L_Zh9.338F_806R.R2.raw.fastq.gz
filename2
fastq
filetype
China: Inner Mongolia
geo_loc_name
Stipa krylovii
host
Illumina Miseq
instrument_model
rhizosphere
isolate
Stipa krylovii of rhizosphere
isolation source
41.14 N 111.38 E
latitude and longitude
W1L_Zh9
library_ID
paired
library_layout
PCR
library_selection
METAGENOMIC
library_source
AMPLICON
library_strategy
rhizosphere metagenome
http://purl.obolibrary.org/obo/NCBITaxon_939928
organism
Illumina
platform
rhizosphere soil 90
tissue
16s of bacteria:Stipa krylovii
title
W1L_Zh9
title