SAMN41132807
External Id
China Agricultural University
INSDC center name
2024-04-30T00:00:00Z
INSDC first public
2024-04-30T13:13:24.530Z
INSDC last update
SRS21161732
INSDC secondary accession
live
INSDC status
Wuchuan No.2
Location
Metagenome or environmental
NCBI submission model
Metagenome.environmental.1.0
NCBI submission package
SRS21161732
SRA accession
not collected
age
2021-08-02
collection_date
not aplicable
cultivar
rhizosphere soil fungil by ITS amplicon-sequencing in corresponding host
description
Soil fungil communities were analyzed using high-throughput amplicon sequencing. The fungal ITS was amplified with the universal primers ITS1F (5’-CTT GGT CAT TTA GAG GAA GTA A-3’) (Gardes and Bruns, 1993) and ITS2R (5’-GCT GCG TTC TTC ATC GAT GC-3’) (White, 1990).
design_description
mature
dev_stage
not aplicable
ecotype
W2L_Zh1.ITS1F_ITS2R.R1.raw.fastq.gz
filename
W2L_Zh1.ITS1F_ITS2R.R2.raw.fastq.gz
filename2
fastq
filetype
China: Inner Mongolia
geo_loc_name
Stipa krylovii
host
Illumina Miseq
instrument_model
rhizosphere
isolate
Stipa krylovii of rhizosphere
isolation source
41.10 N 111.25 E
latitude and longitude
W2L_Zh1
library_ID
paired
library_layout
PCR
library_selection
METAGENOMIC
library_source
AMPLICON
library_strategy
rhizosphere metagenome
http://purl.obolibrary.org/obo/NCBITaxon_939928
organism
Illumina
platform
rhizosphere soil 121
tissue
ITS of fungi:Stipa krylovii
title
W2L_Zh1
title