SAMN46424203
External Id
Beijing Forestry University
INSDC center name
2025-01-27T00:00:00Z
INSDC first public
2025-01-27T00:52:04.254Z
INSDC last update
live
INSDC status
MIGS.eu
NCBI submission model
MIGS.eu.6.0
NCBI submission package
not applicable
biotic_relationship
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collection_date
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collection_method
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cultivar
Flammulina filiformis is an edible fungus with high economic value and an ideal model species for studying macrofungi. However, the absence of a high-quality genome has hindered our comprehensive understanding of F. filiformis. This study presents a gap-free genome assembly of Jin13 utilizing PacBio high-fidelity (HiFi), high-throughput chromosome conformation capture (Hi-C) data, and Ultra-long reads. The 37.1 Mb assembly comprises 12 complete chromosomes, representing the first gap-free genome sequence of a F. filiformis strain. A total of 15302 annotated protein-coding genes (PCG) were identified, and the functions of the genome were predicted using the Nr database, Kyoto Encyclopedia of Genes and Genomes (KEGG), InterPro, Clusters of Orthologous Groups (COG), InterPro and Gene Ontology (GO). Among all the PCGs, 12230 genes (79.92%) were functionally annotated to at least one database. This high-quality reference genome of F. filiformis provides a valuable resource for further studies of the pathobiology and evolution of fungi.
description
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ecotype
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env_broad_scale
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env_local_scale
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env_medium
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estimated_size
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extrachrom_elements
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geo_loc_name
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host
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host_disease
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host_taxid
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isol_growth_condt
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isolate
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isolation_source
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lat_lon
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neg_cont_type
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num_replicons
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omics_observ_id
Flammulina filiformis
http://purl.obolibrary.org/obo/NCBITaxon_2060913
organism
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pathogenicity
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ploidy
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pos_cont_type
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propagation
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ref_biomaterial
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samp_collect_device
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samp_mat_process
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samp_size
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samp_vol_we_dna_ext
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source_material_id
Jin13
strain
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subspecf_gen_lin
Genome assembly of the Flammulina filiformis Jin13
title
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trophic_level