SAMD00222838
External Id
NIBB core research facilities, National Institues for Basic Biology
INSDC center name
2024-04-29T00:00:00Z
INSDC first public
2024-06-02T04:18:25.387Z
INSDC last update
DRS377446
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
DRS377446
SRA accession
S1-S4, Days after seeding (DAS) = 24, Days after shoot-cutting (DAC) = no cutting treatment; CS1-CS4, DAS = 24, DAC = 2; CM1-CM3, DAS = 28, DAC = 6; CL1-CM3, DAS = 36, DAC = 14; L1-L3, DAS = 36, DAC = no cutting treatment; Mp1-Mp6 DAS = 3 months
age
Premier Tech, Canada (for Rhizophagus irregularis DAOM-181602)
biomaterial_provider
2019-05-19/2019-06-18
collection_date
A mixture of multi-indexed PacBio libraries for circular consensus sequencing (CCS). Due to the functional constraints of the Sequel system, sequencing data performed on the same run are registered as a single BAM file. The relationship between the Index and the sample ID is shown below. M2(R.irregularis RNA 24day Mock2), lbc17; M3(R.irregularis RNA 24day Mock3), lbc18; M4(R.irregularis RNA 24day Mock4), lbc19; A241(R.irregularis RNA cut(-) AM(+) 24day 1), lbc26; A242(R.irregularis RNA cut(-) AM(+) 24day 2), lbc27; A243(R.irregularis RNA cut(-) AM(+) 24day 3), lbc28; A244(R.irregularis RNA cut(-) AM(+) 24day 4), lbc29; C21(R.irregularis RNA cut(+) AM(+) 24day 1), lbc30; C22(R.irregularis RNA cut(+) AM(+) 24day 2), lbc2; C23(R.irregularis RNA cut(+) AM(+) 24day 3), lbc58; C24(R.irregularis RNA cut(+) AM(+) 24day 4), lbc59; C61(R.irregularis RNA cut(+) AM(+) 28day 1), lbc60; C62(R.irregularis RNA cut(+) AM(+) 28day 2), lcb61; C63(R.irregularis RNA cut(+) AM(+) 28day 3), lbc62; C141(R.irregularis RNA cut(+) AM(+) 36day 1), lbc63; C142(R.irregularis RNA cut(+) AM(+) 36day 2), lbc64; C143(R.irregularis RNA cut(+) AM(+) 36day 3), lbc4; A361(R.irregularis RNA cut(-) AM(+) 36day 1), lbc6; A362(R.irregularis RNA cut(-) AM(+) 36day 2), lbc7; A363(R.irregularis RNA cut(-) AM(+) 36day 3), lbc8.
description
rhizosphere
env_biome
Japan
geo_loc_name
Lotus japonicus
host
M1-M4, No-infection; S1-S4, Lotus japonicus (MG20); CS1-CS4, Lotus japonicus (MG20): CM1-CM3, Lotus japonicus (MG20); CL1-CL3, Lotus japonicus (MG20); L1-L3, Lotus japonicus (MG20); Mp1-Mp6, Marchantia paleacea
life_stage
Rhizophagus irregularis DAOM 181602=DAOM 197198
http://purl.obolibrary.org/obo/NCBITaxon_747089
organism
Mixed_CCS_AMF
sample_name
ribosomal RNA sequencing of AMF
title