SAMN41132709
External Id
China Agricultural University
INSDC center name
2024-04-30T00:00:00Z
INSDC first public
2024-04-30T13:13:26.023Z
INSDC last update
SRS21161740
INSDC secondary accession
live
INSDC status
Duolun
Location
Metagenome or environmental
NCBI submission model
Metagenome.environmental.1.0
NCBI submission package
SRS21161740
SRA accession
not collected
age
2021-07-31
collection_date
not aplicable
cultivar
rhizosphere soil fungil by ITS amplicon-sequencing in corresponding host
description
Soil fungil communities were analyzed using high-throughput amplicon sequencing. The fungal ITS was amplified with the universal primers ITS1F (5’-CTT GGT CAT TTA GAG GAA GTA A-3’) (Gardes and Bruns, 1993) and ITS2R (5’-GCT GCG TTC TTC ATC GAT GC-3’) (White, 1990).
design_description
mature
dev_stage
not aplicable
ecotype
DW_2.ITS1F_ITS2R.R1.raw.fastq.gz
filename
DW_2.ITS1F_ITS2R.R2.raw.fastq.gz
filename2
fastq
filetype
China: Inner Mongolia
geo_loc_name
Potentilla acaulis
host
Illumina Miseq
instrument_model
rhizosphere
isolate
Potentilla acaulis of rhizosphere
isolation source
42.18 N 117.36 E
latitude and longitude
DW_2
library_ID
paired
library_layout
PCR
library_selection
METAGENOMIC
library_source
AMPLICON
library_strategy
rhizosphere metagenome
http://purl.obolibrary.org/obo/NCBITaxon_939928
organism
Illumina
platform
rhizosphere soil 23
tissue
DW_2
title
ITS of fungi:Potentilla acaulis
title