SAMN41132832
External Id
China Agricultural University
INSDC center name
2024-04-30T00:00:00Z
INSDC first public
2024-04-30T13:14:31.757Z
INSDC last update
SRS21161813
INSDC secondary accession
live
INSDC status
Experimental Station
Location
Metagenome or environmental
NCBI submission model
Metagenome.environmental.1.0
NCBI submission package
SRS21161813
SRA accession
not collected
age
2021-08-02
collection_date
not aplicable
cultivar
rhizosphere soil fungil by ITS amplicon-sequencing in corresponding host
description
Soil fungil communities were analyzed using high-throughput amplicon sequencing. The fungal ITS was amplified with the universal primers ITS1F (5’-CTT GGT CAT TTA GAG GAA GTA A-3’) (Gardes and Bruns, 1993) and ITS2R (5’-GCT GCG TTC TTC ATC GAT GC-3’) (White, 1990).
design_description
mature
dev_stage
not aplicable
ecotype
Y_5.ITS1F_ITS2R.R1.raw.fastq.gz
filename
Y_5.ITS1F_ITS2R.R2.raw.fastq.gz
filename2
fastq
filetype
China: Inner Mongolia
geo_loc_name
Leymus chinensis
host
Illumina Miseq
instrument_model
rhizosphere
isolate
Leymus chinensis of rhizosphere
isolation source
42.8 N 116.42 E
latitude and longitude
Y_5
library_ID
paired
library_layout
PCR
library_selection
METAGENOMIC
library_source
AMPLICON
library_strategy
rhizosphere metagenome
http://purl.obolibrary.org/obo/NCBITaxon_939928
organism
Illumina
platform
rhizosphere soil 146
tissue
ITS of fungi:Leymus chinensis
title
Y_5
title