SAMN41058879
External Id
Helmholtz Centre for Infection Research, HZI
INSDC center name
2024-07-22T00:00:00Z
INSDC first public
2024-07-22T05:41:02.427Z
INSDC last update
SRS21105047
INSDC secondary accession
live
INSDC status
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
SRS21105047
SRA accession
Dominik Schum
collected_by
2023-03-24
collection_date
USA: California, San Francisco, General Hospital
geo_loc_name
Homo sapiens
host
White man 36 years old HIV positive with substance abuse disorder
host_description
abscess, bacterial infection, bacterial pneumonia
host_disease
JE2
isolate
Isolated from a wrist abscess of a man in 2009
isolation_source
37.7554 N 122.4056 W
lat_lon
Staphylococcus aureus
http://purl.obolibrary.org/obo/NCBITaxon_1280
organism
Wild type strain isolated in 2006, meticillin-resistant Staphylococcus aureus. Maintained and used to generate the Nebraska Transposon Mutant Library. https://www.unmc.edu/pathology/csr/research/library.html. Frozen aliquots stored at TUM laboratories, revived and cultured in 2023.
passage_history
USA300 stock 04 wild type
strain
Initial wild type of stock 04 at TUM of Staphylococcus aureus USA300 JA2 (plasmid-curated) used as biological replicate on frequency of resistance (FoR) assays to obtain derivatives with increased MIC to compound L15
title