SAMN41112364
External Id
China Agricultural University
INSDC center name
2024-04-29T00:00:00Z
INSDC first public
2024-04-29T13:36:23.850Z
INSDC last update
SRS21149772
INSDC secondary accession
live
INSDC status
Duolun
Location
Metagenome or environmental
NCBI submission model
Metagenome.environmental.1.0
NCBI submission package
SRS21149772
SRA accession
not collected
age
2021-07-31
collection_date
not aplicable
cultivar
rhizosphere soil bacterial by 16S amplicon-sequencing in corresponding host
description
Soil bacterial communities were analyzed using high-throughput amplicon sequencing. Bacterial 16S rRNA gene V3-V4 region was amplified using primer 338F (5’- ACT CCT ACG GGA GGC AGC AG -3’) (Lane, 1991) and 806 R (5’-GGA CTA CHV GGG TWT CTA AT-3’) (Caporaso et al., 2011; Walters et al., 2016)
design_description
mature
dev_stage
not aplicable
ecotype
DL_9.338F_806R.R1.raw.fastq.gz
filename
DL_9.338F_806R.R2.raw.fastq.gz
filename2
fastq
filetype
China: Inner Mongolia
geo_loc_name
Artemisia frigida
host
Illumina Miseq
instrument_model
rhizosphere
isolate
Artemisia frigida of rhizosphere
isolation source
42.18 N 117.36 E
latitude and longitude
DL_9
library_ID
paired
library_layout
PCR
library_selection
METAGENOMIC
library_source
AMPLICON
library_strategy
rhizosphere metagenome
http://purl.obolibrary.org/obo/NCBITaxon_939928
organism
Illumina
platform
rhizosphere soil 20
tissue
DL_9
title
16s of bacteria:Artemisia frigida
title