SAMN41404969
External Id
Texas Tech University
INSDC center name
2024-05-15T00:00:00Z
INSDC first public
2024-05-15T13:01:33.813Z
INSDC last update
SRS21302819
INSDC secondary accession
live
INSDC status
Beta-lactamase
NCBI submission model
Beta-lactamase.1.0
NCBI submission package
SRS21302819
SRA accession
not provided
beta_lactamase_family
562.130211
bv_brc_id
no
carbapenemase
gyrA:p.D678E, gyrB:p.E185D, pmrB:p.V351I
chromosomal_mutations
2022-10
collection_date
2023-07-24T00:00:00
date_for_experiment_in_lc
no
edta_inhibitor_tested
CP003289.1, CP003291.1, CP003290.1, CP003292.3
genbank_accessions
Escherichia coli O104:H4 str. 2011C-3493,Escherichia coli O83:H1 str. NRG 857C, Escherichia coli O157:H7 str. Sakai
genome_name
USA: TEXAS
geo_loc_name
Canada Geese
host
IS26, cn_7268_IS26, ISEc38, IS629, cn_4876_IS629, cn_15494_IS629, IS682, ISKpn37, ICEEcIHE3034-1, MITEEc1, ISEc42, ISEc13, ISEc40, IS100, ISE38, ISEc31
insertion_sequences
Soil around the lake
isolate
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
Amp-Cro
phenotype
lncFII, lncFII(pCRY)
plasmid
17900983, 18312396, 21108816
publication
blaTEM-1A, blaCTX-M-27, sitABCD
resistance
ecoliMPH9S
sample_id
ST35
sequence_type
O4:H5
serotype
S4
table_id
Beta-lactamase sample from Escherichia coli
title
ESBL
type
traT, sitA, csgA, mschF, mcmA, kpsmII, terC, usp, fimH, papC, fdeC, vat, shiB, chuA, hlyA, cnf1, yehB, yehC, yehD, yehA, tcpC, fyuA, AsIA, ompT, hra, gad, iroN
virulence_genes