SAMN41404955
External Id
Texas Tech University
INSDC center name
2024-05-15T00:00:00Z
INSDC first public
2024-05-15T13:01:32.207Z
INSDC last update
SRS21302824
INSDC secondary accession
live
INSDC status
Beta-lactamase
NCBI submission model
Beta-lactamase.1.0
NCBI submission package
SRS21302824
SRA accession
not provided
beta_lactamase_family
562.130214
bv_brc_id
no
carbapenemase
ampC-promoter:g.-28G>A, pmrB:p.D283G
chromosomal_mutations
2022-10
collection_date
2023-07-21T00:00:00
date_for_experiment_in_lc
no
edta_inhibitor_tested
CP001855, CP001856
genbank_accessions
Escherichia coli O83:H1 str. NRG 857C, Escherichia coli O157:H7 str. Sakai
genome_name
USA: TEXAS
geo_loc_name
Canada Geese
host
ISKpn26, IS3, ISEc9, IS6100, MITEEc1, ISKpn8
insertion_sequences
Goose fecal
isolate
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
Amp-Cro-Chl-Str-Tcy-Sxt-Sox
phenotype
Col2440l, lncQ1, Col(MG828)
plasmid
17900983, 18312396, 21108814
publication
blaTEM-(1B, 33,214,216,206, 210,141,209,57, 34), blaCTX-M-55, tet(A), floR, mph(A), sul1, tet(B), qnrB19
resistance
ecoliSP01F
sample_id
ST731
sequence_type
O83:H42
serotype
F5
table_id
Beta-lactamase sample from Escherichia coli
title
ESBL
type
papA_F19, papC, kbpsMII, kpsE, yehB, yfcV, hlyE, csgA, lpfA, eilA, fimH, AsIA, nlpl, terC, fdeC, chuA
virulence_genes