SAMN41404953
External Id
Texas Tech University
INSDC center name
2024-05-15T00:00:00Z
INSDC first public
2024-05-15T13:01:31.990Z
INSDC last update
SRS21302821
INSDC secondary accession
live
INSDC status
Beta-lactamase
NCBI submission model
Beta-lactamase.1.0
NCBI submission package
SRS21302821
SRA accession
not provided
beta_lactamase_family
562.130233
bv_brc_id
no
carbapenemase
ampC-promoter:g.-18G>A, ampC-promoter:g.-1C>T, pmrB:p.D283G
chromosomal_mutations
2022-10
collection_date
2023-07-20T00:00:00
date_for_experiment_in_lc
no
edta_inhibitor_tested
CP003289.1, CP003291.1, CP003290.1, CP003292.1, CU928163, CU928148, CU928149
genbank_accessions
Escherichia coli O104:H4 str. 2011C-3493, Escherichia coli UMN026
genome_name
USA: TEXAS
geo_loc_name
Canada Geese
host
ISVsa3, cn_5129_ISVsa3, IS100, ISEc1, MITEEc1, ISKpn8, ISEc38, IS3, IS609, ISSfl10, IS911, cn_5813_IS911, IS4, IS26
insertion_sequences
Goose fecal
isolate
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
Amp-Cro-Chl-Tcy-Sox
phenotype
lncHl2A, lncHl2
plasmid
19165319, 2570347, 9278503, 16397293, 9628576, 10734605, 11108008, 11111050, 11258796
publication
tet(A), blaCTX-M-65, sul2
resistance
ecoliSP09F
sample_id
ST986
sequence_type
O8:H19
serotype
F3
table_id
Beta-lactamase sample from Escherichia coli
title
ESBL
type
csgA, hlyE, gad, yehD, yehB, yehC, yehA,fimH, iss, fdeC, terC, nlpl, fyuA, irp2, ompT, lpfA
virulence_genes