SAMN41404954
External Id
Texas Tech University
INSDC center name
2024-05-15T00:00:00Z
INSDC first public
2024-05-15T13:01:32.140Z
INSDC last update
SRS21302822
INSDC secondary accession
live
INSDC status
Beta-lactamase
NCBI submission model
Beta-lactamase.1.0
NCBI submission package
SRS21302822
SRA accession
not provided
beta_lactamase_family
562.130242
bv_brc_id
no
carbapenemase
parC:p.E62K
chromosomal_mutations
2022-10
collection_date
2023-07-24T00:00:00
date_for_experiment_in_lc
no
edta_inhibitor_tested
CP003289.1, CP003291.1, CP003290.1, CP003292.1, U00096, CU928163, CU928148, CU928149
genbank_accessions
Escherichia coli O104:H4 str. 2011C-3493, Escherichia coli UMN026, Escherichia coli str. K-12 substr. MG1655,
genome_name
USA: TEXAS
geo_loc_name
Canada Geese
host
MITEEc1, ISEc38, ISEc1, IS609, IS421, IS3
insertion_sequences
Goose fecal
isolate
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
Amc-Amp-Azt-Fox-Cro-Chl-Nal-Sxt-Sox
phenotype
lncFII, lncl1, p0111, lncHI1B(CIT), lncFIB(pHCM2), lncX2
plasmid
2570347, 9278503, 16397293, 9628576, 10734605, 11108008, 11111050, 11258796
publication
blaCTX-M-27, erm(B)
resistance
ecoliPLMSL04F
sample_id
ST446
sequence_type
O147:H6
serotype
F4
table_id
Beta-lactamase sample from Escherichia coli
title
ESBL
type
gad, terC, fimH, traT, csgA, terC, nlpl, cia, yehC, yehD, yehB, yehA, hlyE, AsIA, terC, cea
virulence_genes