SAMN41404957
External Id
Texas Tech University
INSDC center name
2024-05-15T00:00:00Z
INSDC first public
2024-05-15T13:01:32.510Z
INSDC last update
SRS21302825
INSDC secondary accession
live
INSDC status
Beta-lactamase
NCBI submission model
Beta-lactamase.1.0
NCBI submission package
SRS21302825
SRA accession
not provided
beta_lactamase_family
562.130216
bv_brc_id
no
carbapenemase
parC:p.A56T
chromosomal_mutations
2022-10
collection_date
2023-07-20T00:00:00
date_for_experiment_in_lc
no
edta_inhibitor_tested
BA000007, AB011549, AB011548
genbank_accessions
Escherichia coli O157:H7 str. Sakai
genome_name
USA: TEXAS
geo_loc_name
Canada Geese
host
ISKpn19, IS1006, MITEEc1, IS3, ISEc38, IS629, IS609, ISEc1, ISRaq1, IS30, ISSfl10, IS421, IS5, IS26
insertion_sequences
Goose fecal
isolate
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
Amp-Cro-Chl-Str-Tcy
phenotype
lncFIB(AP001918), lncFII, lncHI2A, lncHI2
plasmid
9628576, 10734605, 11108008, 11111050, 11258796
publication
blaOXA-10, blaCTX-M-65, tet(A), floR, qnrS1, aadA1
resistance
ecoliMPH17F
sample_id
ST999
sequence_type
O49:H10
serotype
F7
table_id
Beta-lactamase sample from Escherichia coli
title
ESBL
type
yehA, yehD, yehB, yehC, nleB, nleC, perA, toxB, nlpl, espF, espA, espJ, cif, tir, iss, AsIA, terC, gad, nleA, astA, traJ, fimH, irp2, fyuA, fdeC, csgA
virulence_genes