SAMN41404960
External Id
Texas Tech University
INSDC center name
2024-05-15T00:00:00Z
INSDC first public
2024-05-15T13:01:32.787Z
INSDC last update
SRS21302827
INSDC secondary accession
live
INSDC status
Beta-lactamase
NCBI submission model
Beta-lactamase.1.0
NCBI submission package
SRS21302827
SRA accession
not provided
beta_lactamase_family
562.130212
bv_brc_id
no
carbapenemase
ampC-promoter:g.-1C>T, ampC-promoter:g.-18G>A, pmrB:p.Y358N
chromosomal_mutations
2022-10
collection_date
2023-10-03T00:00:00
date_for_experiment_in_lc
no
edta_inhibitor_tested
U00096, CP003289.1, CP003291.1, CP003290.1, CP003292.1, BA000007, AB011549, AB011548
genbank_accessions
Escherichia coli O104:H4 str. 2011C-3493, Escherichia coli O157:H7 str. Sakai, Escherichia coli O83:H1 str. NRG 857C, Escherichia coli str. K-12 substr. MG1655
genome_name
USA: TEXAS
geo_loc_name
Canada Geese
host
MITEEc1, ISEc5, ISEc31, IS3
insertion_sequences
Goose fecal
isolate
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
2570347, 9278503, 16397293, 9628576, 10734605, 11108008, 11111050, 11258796, 19165319, 17900983, 18312396, 21108814
publication
sitABCD
resistance
ecoliPLMSL14F
sample_id
ST666
sequence_type
O169:H8
serotype
F10
table_id
Beta-lactamase sample from Escherichia coli
title
ESBL
type
sitA, ompT, lpfA, fimH, yehC, yehA, yehB, yehD, fdeC, hlyE, csgA, terC, iss, gad, nlpl
virulence_genes