SAMN41404966
External Id
Texas Tech University
INSDC center name
2024-05-15T00:00:00Z
INSDC first public
2024-05-15T13:01:33.553Z
INSDC last update
SRS21302816
INSDC secondary accession
live
INSDC status
Beta-lactamase
NCBI submission model
Beta-lactamase.1.0
NCBI submission package
SRS21302816
SRA accession
not provided
beta_lactamase_family
562.130203
bv_brc_id
no
carbapenemase
ampC-promoter:g.-28G>A, gyrB:p.E185D, gyrA:p.A828S, gyrA:p.T850S, pmrA:p.G144D
chromosomal_mutations
2022-10
collection_date
2023-07-24T00:00:00
date_for_experiment_in_lc
no
edta_inhibitor_tested
CU928163, CU928148, CU928149, U00096, CU928164, BA000007, AB011549, AB011548
genbank_accessions
Escherichia coli UMN026, Escherichia coli str. K-12 substr. MG1655, Escherichia coli IAI39, Escherichia coli O157:H7 str. Sakai,
genome_name
USA: TEXAS
geo_loc_name
Canada Geese
host
IS6100, ISVsa3, ISKpn26, ISEc41, MITEEc1, IS609, ISEc31, IS26
insertion_sequences
Soil around the lake
isolate
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
Amp-Azt-Cro-Chl-Tcy-Sxt-Sox
phenotype
lncR
plasmid
19165319, 2570347, 9278503, 16397293, 9628576, 10734605, 11108008, 11111050, 11258796
publication
tet(A), mph(A), blaCTX-M-32, qacE
resistance
ecoliMP1S
sample_id
ST675
sequence_type
O106:H45
serotype
S1
table_id
Beta-lactamase sample from Escherichia coli
title
ESBL
type
yehB, yehA, yehC, yehD, ompT, hlyE, fimH, gad, iss, csgA, terC, iss, fdeC, air, AsIA,
virulence_genes