SAMN41404965
External Id
Texas Tech University
INSDC center name
2024-05-15T00:00:00Z
INSDC first public
2024-05-15T13:01:33.397Z
INSDC last update
SRS21302814
INSDC secondary accession
live
INSDC status
Beta-lactamase
NCBI submission model
Beta-lactamase.1.0
NCBI submission package
SRS21302814
SRA accession
not provided
beta_lactamase_family
562.130213
bv_brc_id
no
carbapenemase
ampC-promoter:g.-1C>T, pmrA:p.G144S, pmrB:p.D283G
chromosomal_mutations
2022-10
collection_date
2023-07-20T00:00:00
date_for_experiment_in_lc
no
edta_inhibitor_tested
CP000038, CP000039, CP000641, CP000642, CP000643
genbank_accessions
Escherichia coli O157:H7 str. Sakai, Escherichia coli O104:H4 str. 2011C-3493
genome_name
USA: TEXAS
geo_loc_name
Canada Geese
host
ISEc17, ISVsa3, IS102, IS682, MITEEc1, cn_2806_IS682, IS421, ISEc38, ISSen1, ISKpn24, IS100, ISEc1, IS26
insertion_sequences
Water from lake
isolate
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
Amp-Cro-Chl-Cip-Nal-Str-Tcy-Sox
phenotype
lncFIB(AP001918), lncFIC(FII), lncFIA, lncHl2, lncHl2A, p0111
plasmid
16122562, 16275786, 19165319, 9628576, 10734605, 11108008, 11111050, 11258796
publication
blaTEM-1A, tet(A), blaCTX-M-65, floR, sul2, aph(6)-ld
resistance
ecoliPLMSL01W
sample_id
ST479
sequence_type
O38:H23
serotype
W1
table_id
Beta-lactamase sample from Escherichia coli
title
ESBL
type
ompT, yehB, yehC, yehA, yehD, traT, traJ, csgA, lpfA, iss, terC, fdeC, fimH, hlyE, gad
virulence_genes