SAMN41404964
External Id
Texas Tech University
INSDC center name
2024-05-15T00:00:00Z
INSDC first public
2024-05-15T13:01:33.337Z
INSDC last update
SRS21302815
INSDC secondary accession
live
INSDC status
Beta-lactamase
NCBI submission model
Beta-lactamase.1.0
NCBI submission package
SRS21302815
SRA accession
not provided
beta_lactamase_family
562.147499
bv_brc_id
no
carbapenemase
No mutation in AmpC
chromosomal_mutations
2022-10
collection_date
2023-10-03T00:00:00
date_for_experiment_in_lc
no
edta_inhibitor_tested
CU928164, BA000007, AB011549, AB011548, CU928163, CU928148, CU928149
genbank_accessions
Escherichia coli IAI39, Escherichia coli O157:H7 str. Sakai, Escherichia coli UMN026
genome_name
USA: TEXAS
geo_loc_name
Canada Geese
host
ISVsa3, ISKpn19, ISEc9, IS1133, IS609, ISKpn8, MITEEc1, Tn6024, ISEc1, IS5, ISAeme22, IS903, IS21
insertion_sequences
Goose fecal
isolate
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
Amp
phenotype
lncFIC(Fll), lncFIB(AP001918), lncl2, lncR
plasmid
19165319, 9628576, 10734605, 11108008, 11111050, 11258796
publication
blaCTX-M-15, blaTEM-1B, qnrS1, sul2, dfrA14,tet(A), aph(3")-lb, aadA1, aph(6)-ld
resistance
YT4 LS5.2F
sample_id
ST960
sequence_type
O96:H53
serotype
F14
table_id
Beta-lactamase sample from Escherichia coli
title
ESBL
type
traT, traJ, yehC, yehD, anr, yehA, yehB, iss, gad, terC, hlyE, nlpl, hra, csgA,
virulence_genes