SAMN41404970
External Id
Texas Tech University
INSDC center name
2024-05-15T00:00:00Z
INSDC first public
2024-05-15T13:01:33.870Z
INSDC last update
SRS21302820
INSDC secondary accession
live
INSDC status
Beta-lactamase
NCBI submission model
Beta-lactamase.1.0
NCBI submission package
SRS21302820
SRA accession
not provided
beta_lactamase_family
562.130217
bv_brc_id
no
carbapenemase
No mutation in AmpC
chromosomal_mutations
2022-10
collection_date
2023-07-24T00:00:00
date_for_experiment_in_lc
no
edta_inhibitor_tested
CP003289.1, CP003291.1, CP003290.1, CP003292.1
genbank_accessions
Escherichia coli O104:H4 str. 2011C-3493
genome_name
USA: TEXAS
geo_loc_name
Canada Geese
host
IS6100, IS102, MITEEc1, IS609, ISEc1, IS609, ISEc1, cn_2244_ISEc1, IS629, ISEcI1, ISEc31, IS911, IS629, IS102, ISSfl10, ISKpn8, IS421, ISKox3
insertion_sequences
Soil around the lake
isolate
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
Amc-Amp-Azt-Cro-Chl-Cip-Gen-Nal-Str-Tcy-Sxt-Sox
phenotype
lncFIA, lncFII(pHN7A8), Col156, lncFIB(AP1918), lncX4, lncl1
plasmid
2570347, 9278503, 16397293,U00096
publication
blaTEM-(1B, 33,214,216,206, 210,141,209,34), blaCTX-M-14, tet(A), blaHERA-3, sitABCD, dfrA17, mph(A), aph(6)-ld
resistance
ecoliMP12S
sample_id
ST2
sequence_type
O101:H9
serotype
S5
table_id
Beta-lactamase sample from Escherichia coli
title
ESBL
type
papA_F19, iucC, sitA, csgA, irp2, fyuA, traJ, traT, iss, yehB, yehA, yehC, yehD, tia, shiA, AsIA, gad, capU, fdeC, hlyE, senB, cea, astA, terC, nlpl
virulence_genes