SAMN41404967
External Id
Texas Tech University
INSDC center name
2024-05-15T00:00:00Z
INSDC first public
2024-05-15T13:01:33.700Z
INSDC last update
SRS21302818
INSDC secondary accession
live
INSDC status
Beta-lactamase
NCBI submission model
Beta-lactamase.1.0
NCBI submission package
SRS21302818
SRA accession
not provided
beta_lactamase_family
562.130215
bv_brc_id
no
carbapenemase
ampC-promoter:g.-28G>A, gyrA:p.T850S, gyrA:p.A828S, pmrB:p.H2R
chromosomal_mutations
2022-10
collection_date
2023-07-24T00:00:00
date_for_experiment_in_lc
no
edta_inhibitor_tested
CP003289.1, CP003291.1, CP003290.1, CP003292.1
genbank_accessions
Escherichia coli O104:H4 str. 2011C-3493,Escherichia coli O83:H1 str. NRG 857C, Escherichia coli O157:H7 str. Sakai
genome_name
USA: TEXAS
geo_loc_name
Canada Geese
host
IS609, ISKpn26, ISEc41, MITEEc1, ISEc31
insertion_sequences
Soil around the lake
isolate
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
Amc-Amp-Fox-Cro-Chl-Mp-Nal-Str-Sxt
phenotype
17900983, 18312396, 21108814
publication
blaCTXM-32
resistance
ecoliPLMSL11S
sample_id
ST675
sequence_type
O106:H45
serotype
S2
table_id
Beta-lactamase sample from Escherichia coli
title
ESBL
type
yehA, yehD, yehB, yehC, iss, AsIA, terC, gad, fimH, ompT, eilA, hlyE, kpsE, kpsMII, air, fdeC, csgA
virulence_genes