SAMN41404959
External Id
Texas Tech University
INSDC center name
2024-05-15T00:00:00Z
INSDC first public
2024-05-15T13:01:32.723Z
INSDC last update
SRS21302828
INSDC secondary accession
live
INSDC status
Beta-lactamase
NCBI submission model
Beta-lactamase.1.0
NCBI submission package
SRS21302828
SRA accession
not provided
beta_lactamase_family
562.130244
bv_brc_id
no
carbapenemase
ampC-promoter:g.-1C>T, ampC-promoter:g.-18G>A,
chromosomal_mutations
2022-10
collection_date
2023-07-21T00:00:00
date_for_experiment_in_lc
no
edta_inhibitor_tested
BA000007, AB011549, AB011548, CP003289.1, CP003291.1, CP003290.1, CP003292, CU928164
genbank_accessions
Escherichia coli O157:H7 str. Sakai, Escherichia coli O104:H4 str. 2011C-3493,Escherichia coli IAI39
genome_name
USA: TEXAS
geo_loc_name
Canada Geese
host
ISVsa3, MITEEc1, ISEc31, IS609, ISEc38, IS30, IS609, IS5, IS100, IS26
insertion_sequences
Goose fecal
isolate
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
Amc-Amp-Azt-Cro-Chl-Str-Tcy-Sox
phenotype
lncR
plasmid
9628576, 10734605, 11108008, 11111050, 11258796, 19165319
publication
blaTEM-1A, blaCTX-M-1, sul2, aph(6)-ld, mph(A)
resistance
ecoliSP13F
sample_id
ST21
sequence_type
O8:H51
serotype
F9
table_id
Beta-lactamase sample from Escherichia coli
title
ESBL
type
fdeC, hlyE, csgA, gad, fimH, yehC, yehA, yehB, yehD, terC, nlpl, lpfA
virulence_genes