SAMN41404951
External Id
Texas Tech University
INSDC center name
2024-05-15T00:00:00Z
INSDC first public
2024-05-15T13:01:31.770Z
INSDC last update
SRS21302811
INSDC secondary accession
live
INSDC status
Beta-lactamase
NCBI submission model
Beta-lactamase.1.0
NCBI submission package
SRS21302811
SRA accession
not provided
beta_lactamase_family
562.13021
bv_brc_id
no
carbapenemase
ampC-promoter:p.R24*, pmrB:p.D283G, gyrB:p.E703D, gyrA:p.D678E
chromosomal_mutations
2022-10
collection_date
2023-07-21T00:00:00
date_for_experiment_in_lc
no
edta_inhibitor_tested
BA000007, AB011549, AB011548
genbank_accessions
Escherichia coli O157:H7 str. Sakai
genome_name
USA: TEXAS
geo_loc_name
Canada Geese
host
ISVsa3, ISEc9, IS100, MITEEC1, ISEc46, ISEc1, ISEc38, IS4, cn_1519_ISEc1, ISEc17, ISEc31
insertion_sequences
Goose fecal
isolate
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
Amp-Cro-Chl-Gen-Tcy-Sxt-Sox
phenotype
lncFIB(AP001918), lncFII
plasmid
9628576, 10734605, 11108008, 11111050, 11258796
publication
blaCTX-M-55, tet(A), aadA1, sul3, aac(3)-lla, dfrA14, aph(3')-la
resistance
ecoliMP8F
sample_id
ST3
sequence_type
O17:H18
serotype
F1
table_id
Beta-lactamase sample from Escherichia coli
title
ESBL
type
ompT, hlyF, traJ, traT, iutA, iucC, kpsE, lpfA, mcmA, air chuA, sitA, iss, fimH, fdeC, nlpl, terC, hlyE, csgA, AsIA
virulence_genes