SAMN41381316
External Id
Rhode Island Department of Health State Health Laboratories: Sequencing Core
INSDC center name
2024-05-13T00:00:00Z
INSDC first public
2024-05-13T12:26:20.450Z
INSDC last update
SRS21280240
INSDC secondary accession
live
INSDC status
SARS-CoV-2: wastewater surveillance
NCBI submission model
SARS-CoV-2.wwsurv.1.0
NCBI submission package
SRS21280240
SRA accession
Rhode Island Department of Health
collected_by
2024-01-18
collection_date
RI-1
collection_site_id
1L
collection_volume
ceres nanotrap
concentration_method
RISHL24WW011
description
qiagen qiaamp viral rna mini kit
extraction_method
USA: Rhode Island
geo_loc_name
wastewater
isolation_source
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
RI wastewater closed pilot
project_name
public health surveillance institution-level
purpose_of_ww_sampling
detection of target by ddPCR
purpose_of_ww_sequencing
Rhode Island Department of Health
sequenced_by
RISHL24WW011
title
pepper mild mottle virus
ww_endog_control_1
NA
ww_population
NA
ww_population_source
24
ww_sample_duration
raw wastewater
ww_sample_matrix
Not Provided
ww_sample_site
composite
ww_sample_type
RI
ww_surv_jurisdiction
SARS-CoV-2
ww_surv_target_1
19.79
ww_surv_target_1_conc
copies/uL
ww_surv_target_1_conc_unit
N gene (N1)
ww_surv_target_1_gene
yes
ww_surv_target_1_known_present
GT-Digital SARS-CoV-2 Wastewater Surveillance Assay For QIAcuity dPCR
ww_surv_target_1_protocol