SAMN41404968
External Id
Texas Tech University
INSDC center name
2024-05-15T00:00:00Z
INSDC first public
2024-05-15T13:01:33.757Z
INSDC last update
SRS21302817
INSDC secondary accession
live
INSDC status
Beta-lactamase
NCBI submission model
Beta-lactamase.1.0
NCBI submission package
SRS21302817
SRA accession
not provided
beta_lactamase_family
562.13024
bv_brc_id
no
carbapenemase
ampC-promoter:g.-1C>T, ampC-promoter:g.-18G>A, gyrB:p.R698C, pmrB:p.D283N
chromosomal_mutations
2022-10
collection_date
2023-07-20T00:00:00
date_for_experiment_in_lc
no
edta_inhibitor_tested
CP003289.1, CP003291.1, CP003290.1, CP003292.2
genbank_accessions
Escherichia coli O104:H4 str. 2011C-3493,Escherichia coli O83:H1 str. NRG 857C, Escherichia coli O157:H7 str. Sakai
genome_name
USA: TEXAS
geo_loc_name
Canada Geese
host
ISEc38, ISEc37, ISEc48, IS30, cn_5632_ISEc37, MITEEc1, ISKpn8, IS609, ISEc1, cn_8060_ISEc1, IS26
insertion_sequences
Soil around the lake
isolate
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
Amp-Cro
phenotype
lncFII, lncFIA, lncHI2A, lncHI2
plasmid
17900983, 18312396, 21108815, 16122562, 16275786
publication
blaCTX-M-65
resistance
ecoliGP07S
sample_id
ST1110
sequence_type
H7
serotype
S3
table_id
Beta-lactamase sample from Escherichia coli
title
ESBL
type
terC, traT, astA, yehB, yehA, yehC, yehD, hlyE, iss, fimH, nlpl, terC, lpfA, gad, ompT, fdeC, terC
virulence_genes