SAMN41404952
External Id
Texas Tech University
INSDC center name
2024-05-15T00:00:00Z
INSDC first public
2024-05-15T13:01:31.827Z
INSDC last update
SRS21302810
INSDC secondary accession
live
INSDC status
Beta-lactamase
NCBI submission model
Beta-lactamase.1.0
NCBI submission package
SRS21302810
SRA accession
not provided
beta_lactamase_family
562.130231
bv_brc_id
no
carbapenemase
parC:p.A56T, gyrA:p.D87N, parC:p.S80I, gyrA:p.S83L
chromosomal_mutations
2022-10
collection_date
2023-07-21T00:00:00
date_for_experiment_in_lc
no
edta_inhibitor_tested
U00096, CP003289.1, CP003291.1, CP003290.1, CP003292.1, BA000007, AB011549, AB011548
genbank_accessions
Escherichia coli str. K-12 substr. MG1655, Escherichia coli O104:H4 str. 2011C-3493, Escherichia coli O157:H7 str. Sakai
genome_name
USA: TEXAS
geo_loc_name
Canada Geese
host
ISVsa3, IS682, cn_2799_IS682, ISEc1, MITEEc1, ISEc31, IS903, cn_3131_IS903, ISKpn8, IS609, IS102, ISEc38, ISKpn26, IS100, IS421, IS3, IS30, IS26,
insertion_sequences
Goose fecal
isolate
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
Amp-Azt-Fox-Cro-Chl-Cip-Nal-Str-Tcy-Sox
phenotype
lncl2, lncFII(pHN7A8), lncFIA, Col(MG828), lncR, lncFIB(AP001918)
plasmid
2570347, 9278503, 16397293, 9628576, 10734605, 11108008, 11111050, 11258796
publication
tet(B), blaTEM-1A, tet(A), blaCTX-M-1, sul2, aph(6)-ld, mph(A)
resistance
ecoliGP05F
sample_id
ST2
sequence_type
O101:H7
serotype
F2
table_id
Beta-lactamase sample from Escherichia coli
title
ESBL
type
fimH, csgA, hlyE, lpfA, yehC, yehB, yehA, yehD, nlpl, terC, gad, fdeC, traT
virulence_genes