SAMN41404956
External Id
Texas Tech University
INSDC center name
2024-05-15T00:00:00Z
INSDC first public
2024-05-15T13:01:32.450Z
INSDC last update
SRS21302823
INSDC secondary accession
live
INSDC status
Beta-lactamase
NCBI submission model
Beta-lactamase.1.0
NCBI submission package
SRS21302823
SRA accession
not provided
beta_lactamase_family
562.130224
bv_brc_id
no
carbapenemase
ampC-promoter:g.-1C>T, ampC-promoter:g.-18G>A,
chromosomal_mutations
2022-10
collection_date
2023-07-20T00:00:00
date_for_experiment_in_lc
no
edta_inhibitor_tested
CP001855, CP001857
genbank_accessions
Escherichia coli UMN026, Escherichia coli O104:H4 str. 2011C-3493, Escherichia coli O83:H1 str. NRG 857C
genome_name
USA: TEXAS
geo_loc_name
Canada Geese
host
ISKpn19, IS1006, MITEEc1, IS100, ISEc18, ISVsa5, IS609, IS30, IS5, IS26
insertion_sequences
Goose fecal
isolate
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
Amp-Cro-Chl-Str-Tcy-Sxt
phenotype
lncFIB(AP001918), lncHl2A, lncHl2, lncFll, lncX1
plasmid
17900983, 18312396, 21108815
publication
blaOXA-10, blaCTX-M-65, tet(A), aadA1, qnrS1, floR
resistance
ecoliSP16F
sample_id
ST88
sequence_type
O4:H11
serotype
F6
table_id
Beta-lactamase sample from Escherichia coli
title
ESBL
type
iss, terC, yehD, yehA, yehB, yehC, tia, ompT, fimH, csgA, fdeC, gad, afaD, papC, hha, nlpl
virulence_genes