SAMN41940516
External Id
Curtin University of Technology
INSDC center name
2024-06-20T00:00:00Z
INSDC first public
2024-06-20T23:15:25.260Z
INSDC last update
SRS21694154
INSDC secondary accession
live
INSDC status
MIGS.eu
NCBI submission model
MIGS/MIMS/MIMARKS.plant-associated
NCBI submission model
MIGS.eu.plant-associated.6.0
NCBI submission package
SRS21694154
SRA accession
2023
collection_date
Fungal mRNA was extracted in triplicate from the mycelial phase of isolate SPF8 on PDA medium from a fresh two-weeks-old culture. Samples were prepared with the Quick-RNA™ Fungal/Bacterial Miniprep kit (Zymo Research) and Novogene NGS RNA Library Prep Set (PT042), from which Illumina RNAseq reads were generated (PE150 Novaseq 6000).
description
cropland biome [ENVO_01000245]
env_broad_scale
orchard [ENVO:00000115]
env_local_scale
leaf [PO:0025034]
env_medium
Greece: Amfikleia, Fthiotida
geo_loc_name
Pistacia vera L.
host
Pistachio
host_common_name
Septoria leaf spot disease
host_disease
~10m
host_height
susceptible
host_phenotype
55513
host_taxid
Mycelial phase grown on PDA medium from a fresh two-week-old culture. Replicate 2 of 3.
isol_growth_condt
SPF8
isolate
38.629963 N 22.681427 E
lat_lon
Septoria pistaciarum
http://purl.obolibrary.org/obo/NCBITaxon_1387573
organism
MIGS Eukaryotic sample from Septoria pistaciarum
title