SAMN42463815
External Id
G10K
INSDC center name
2024-07-12T00:00:00Z
INSDC first public
2024-08-09T00:46:22.900Z
INSDC last update
SRS22283578
INSDC secondary accession
live
INSDC status
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS22283578
SRA accession
MGP-1488.1
Source ID
University of the Pacific: Marcos Gridi-Papp
biomaterial_provider
2020-11-25
birth_date
Marcos Gridi-Papp
collected_by
2022-04-05
collection_date
The Tungara frog (Engystomops pustulosus) is a species of frog in the family Leptodactylidae. It is a small nocturnal terrestrial frog found in Mexico, Central America, and the northeastern regions of South America. The tungara frog exhibits interesting behavior in male/female interactions. Male vocalizations are critical in female mate choice, and females often prefer males who give complex mating calls at a lower frequency rather than simple calls at a higher frequency (from Wikipedia entry). This sample of a female individual (aEngPut1/MGP-1488.1) was used to sequence Hi-C scaffolding for a trio assembly (offspring aEngPut4/MGP-1488.2, mother aEngPut2/MGP-1444.1, father aEngPut3/MGP-1452.1). The individuals were bred in captivity and procured by Marcos Gridi-Papp to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco.
description
adult
dev_stage
USA: Stockton, California
geo_loc_name
aEngPut1
isolate
37.9795 N 121.313 W
lat_lon
Engystomops pustulosus
http://purl.obolibrary.org/obo/NCBITaxon_76066
organism
female
sex
-80oC
store_cond
liver, muscle, brain, gonads, blood, misc
tissue
Animal sample from sibling aEngPut1 of Engystomops pustulosus (Tungara frog) for VGP reference genome, aEngPut4
title
flash frozen, 100% EtOH
treatment