SAMN43039852
External Id
G10K
INSDC center name
2024-08-05T00:00:00Z
INSDC first public
2024-08-09T00:33:20.817Z
INSDC last update
SRS22283570
INSDC secondary accession
live
INSDC status
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS22283570
SRA accession
8964
Source ID
Feanix Biotechnologies Inc: Thomas Bishop; University of Pennsylvania: Wojciech Panek
biomaterial_provider
racing homer
breed
2023-03-29
collection_date
The rock pigeon is a member of the bird family Columbidae (doves and pigeons). It's a fairly large pigeon with pale gray overall with two bold black wingbars and iridescent purple and green on neck. This species has wild and feral populations throughout the world. True wild birds nest on cliffs and in caves from western Europe to central Asia. Feral varieties are common in cities and farmland, often in large flocks. This sample is from a breed of domestic pigeon (Columba livia domestica) which includes about 1,000 different breeds and descends from the wild rock dove species. This sample is part of a trio assembly (offspring bColLiv1, mother bColLiv2, father bColLiv3). The individuals were sampled in Davis, California by Thomas Bishop and Wojciech Panek, and coordinated by Matthew Biegler and Erich D. Jarvis to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Jennifer Balacco, Giulio Formenti. Assembly and curation was performed by Simona Secomandi.
description
adult
dev_stage
USA: Davis, California
geo_loc_name
bColLiv2
isolate
38.513750 N 121.754494 W
lat_lon
Columba livia
http://purl.obolibrary.org/obo/NCBITaxon_8932
organism
female
sex
-80oC
store_cond
blood
tissue
Animal sample from mother bColLiv2 of Columba livia (rock pigeon) for VGP reference genome, bColLiv1
title
100% EtOH
treatment