2025-02-07
ENA first public
ERC000047
ENA-CHECKLIST
Centre for Genomic Epidemiology;National Food Institute;Technical University of Denmark (DTU);Denmark;Centre for Genomic Epidemiology National Food Institute Technical University of Denmark (DTU) Denmark DTU-GE
INSDC center name
public
INSDC status
ERS23135807
SRA accession
DTU_2024_1025642_1_MG_Kigoma_Road_8.bin.335
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
SPAdes v3.14.0
assembly software
Abundance and Tetranucleotide frequency
binning parameters
MetaBAT v2.12.1
binning software
microbiome
broad-scale environmental context
DTU-GE
broker name
2024-01-27
collection date
98.08
%
completeness score
CheckM v1.0.18
completeness software
0.16
%
contamination score
This sample represents a MAG derived from the metagenomic sample ERS22583728
description
fecal material
environmental medium
Tanzania
geographic location (country and/or sea)
-4.893941
DD
geographic location (latitude)
29.673386
DD
geographic location (longitude)
goat feces
isolation_source
Road
local environmental context
goat gut metagenome
metagenomic source
goat gut metagenome
organism
The impact of environmental pollution on the gut microbiome of Tanzanian goats
project name
ERS22583728
sample derived from
goat gut metagenome
scientific_name
multi-marker approach
taxonomic identity marker
MAG from goat gut microbiome with the following gtdb taxonomic classification: d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes sp017621455
title