https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
AustralianMicrobiome_metadata_defs_url
SAMN44283431
External Id
CSIRO
INSDC center name
2024-10-14T00:00:00Z
INSDC first public
2024-10-14T22:24:23.333Z
INSDC last update
SRS22904294
INSDC secondary accession
live
INSDC status
MIMS.me
NCBI submission model
MIGS/MIMS/MIMARKS.water
NCBI submission model
MIMS.me.water.6.0
NCBI submission package
SRS22904294
SRA accession
1.6 μmol/L
ammonium
meth_2.20 (https://research.csiro.au/ambsm/)
ammonium_meth
free living
biotic_relationship
below detection limit
chlorophyll_a
meth_2.20 (https://research.csiro.au/ambsm/)
chlorophyll_a_meth
2021-06-15T03:00:00Z
collection_date
5.2 S/m
conductivity_aqueous
meth_2.21 (https://research.csiro.au/ambsm/)
conductivity_aqueous_meth
15.9 m
depth
Keywords: GSC:MIxS;MIMS:6.0
description
6 Water
env_broad_scale
6.6.3 Estuary/coastal waters—intensive use
env_local_scale
Saline water [ENVO_00002010]
env_medium
CSIRO; Derwent Estuary Program
funding_agency
Estuarine (tidal including deltas; tidal marshes and mangrove swamps)
general_env_feature
Australia:Tasmania [GAZ_00007396]
geo_loc_name
102.100.100/142465_15.9
isolate
Coastal water
isolation_source
42.8512 S 147.3369 E
lat_lon
1649191
ncbi_txid
3.8 μmol/L
nitrate_nitrite
meth_2.20 (https://research.csiro.au/ambsm/)
nitrate_nitrite_meth
Not provided
notes
meth_3.1.9 (https://research.csiro.au/ambsm/)
nucl_acid_ext
estuary metagenome
http://purl.obolibrary.org/obo/NCBITaxon_1649191
organism
231.27 μmol/L
oxygen
meth_2.20 (https://research.csiro.au/ambsm/)
oxygen_meth
8.02
ph
meth_2.21 (https://research.csiro.au/ambsm/)
ph_meth
0.6 μmol/L
phosphate
meth_2.20 (https://research.csiro.au/ambsm/)
phosphate_meth
34.14 PSU
salinity
meth_2.21 (https://research.csiro.au/ambsm/)
salinity_meth
meth_1.18 (https://research.csiro.au/ambsm/)
samp_collect_device
meth_1.18 (https://research.csiro.au/ambsm/)
samp_mat_process
2 L
samp_size
2 L
samp_vol_we_dna_ext
CSIRO; Derwent Estuary Program
sample_attribution
102.100.100/142465
sample_id
Derwent Estuary U2
sample_site_location_description
Jodie van de Kamp
sample_submitter
Coastal water
sample_type
Not provided
sample_volume_notes
4.5 m
secchi_depth
meth_2.21 (https://research.csiro.au/ambsm/)
secchi_depth_meth
http://hdl.handle.net/102.100.100/142465
source_mat_id
meth_1.18 (https://research.csiro.au/ambsm/)
store_cond
12.203 degC
temp
meth_2.21 (https://research.csiro.au/ambsm/)
temp_meth
102.100.100/142465
title
15.9 m
tot_depth_water_col
1 mg/L
tss
meth_2.20 (https://research.csiro.au/ambsm/)
tss_meth
0.42 NTU
turbidity
meth_2.21 (https://research.csiro.au/ambsm/)
turbidity_meth
https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/142465
url