SAMN44284560
External Id
Chongqing Medical University
INSDC center name
2024-10-15T13:50:13.553Z
INSDC first public
2024-10-16T15:35:21.387Z
INSDC last update
SRS22925186
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
Microbe.1.0
NCBI submission package
SRS22925186
SRA accession
not collected
collected_by
2022-06-05
collection_date
not collected
culture_collection
The C. albicans SC5314 chitin synthase (CHS1) gene (Gene ID: 3641364) was specifically targeted using RPA reactions. And DNA amplification products directly were detected by high-throughput sequencing. Both RPA and PCR products were amplified with adapters and barcodes suitable for Illumina NovaSeq sequencing. Raw reads were obtained from Tsingke Biotechnology (Beijing, China) and analyzed using Python scripts (Python 3.11.8), filtering reads with an average Phred quality (Q score) of at least 25.
description
not collected
genotype
not collected
geo_loc_name
Homo sapiens
host
CHS1 gene amplification by RPA system
isolate
American Type Culture Collection (ATCC)
isolation_source
Candida albicans
http://purl.obolibrary.org/obo/NCBITaxon_5476
organism
CHS1 gene by RPA amplification
sample_type
SC5314
serotype
C. albicans SC5314 CHS1-RPA
strain
sequencing data analysis of C. albicans CHS1 gene by RPA amplification
title