SAMN44461867
External Id
G10K
INSDC center name
2024-10-26T00:00:00Z
INSDC first public
2024-11-16T14:54:28.293Z
INSDC last update
SRS23231545
INSDC secondary accession
live
INSDC status
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS23231545
SRA accession
19-011
Source ID
University of Alaska Fairbanks: Anya Goropashnaya
biomaterial_provider
2019-06-01
birth_date
University of Alaska Fairbanks: Vadim Fedorov
collected_by
2020-02-07
collection_date
The Arctic ground squirrel (Urocitellus parryii) is a species of ground squirrel native to the Arctic and Subarctic of North America and Asia. It can be found in regions of Northern Canada ranging from the Arctic Circle to northern British Columbia, and down to the southern border of the Northwest Territories, as well as Alaska and Siberia (from Wikipedia entry). The sample was procured from the Atigun Pass area of Alaska by Vadim Fedorov and Anya Goropashnaya of the University of Alaska Fairbanks and coordinated by Trygve Bakken, Ed Lein, and Rebecca Hodge at the Allen Institute for Brain Science to generate HiC scaffolding data for the mUroPar3 reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco.
description
Juvenile
dev_stage
USA: Atigun Pass Area, Alaska
geo_loc_name
mUroPar3
isolate
68.12944 N 149.47583 W
lat_lon
Urocitellus parryii
http://purl.obolibrary.org/obo/NCBITaxon_9999
organism
male
sex
-80oC
store_cond
liver
tissue
Animal sample from Urocitellus parryii (Arctic ground squirrel) for VGP reference genome, mUroPar3
title
frozen
treatment